Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1532 ATGCTGATCTCTGATGAGGGAGGTTGTGATGTGTTTTTTGACTCAGTGGATTGTTTTTCACCAATCCAAGCGTCTGCTTCGACAGAAGAAGAGTTGGGTTATGAGATGTGGGTGAATGAGCCTGTGAGTGTGAAGGAAAGGAGGGGAAAGTTTTTGCAGGGGATGGGATGGGATGATGGTTCTTCCAAGGTTTGTGCTCAAGAGAATAATATGATGAATTCTGATAACTCATCAGTGAGATTTGAACTGGAGAGGACCAGCGATAGTGGGGCAGTTTCAAATACTTCCAGTTGTATTTTGCCTTATGATCGGGTTTCTGAGGAGTTGGTTCTCTCGGGAAGGGAAACAACTTCTGAGGCACAAGACTTGTTTGACGATCAGAAAGGAGGTCCCCAAGATAAACCAGATGCAAGTTCAGAAGAGAAGATTTATGAGGTTTCTTTTACAGATGAAGAGATTAGACATCGAAAAGCTGAGGCTCGAGAGAAGAAAAGTTGGTGGCAGCACTTTATGAGCAACAAAAAAGGAGGTTGGGGTAAAATCAGTTCAAAATTGGATTCAGGGCCAAATAAAAGTCGTAGAATAAAAGTAAAGCAGAATAAGAAGAGGTGGATGGAGTTGAGTGCTCTGTATATTGGGCAAGAGATTAGAGCTCACGAAGGCCTGATTTGGACTATGAAGTTTAGTCCCAATGGCCAATATCTGGCTAGTGGAGGTGAAGATGGTGTAATACGCATATGGCGTGTGACATCACTAGATACATCTAGTATCTGCTTCAATGCGGAGGACAGTGCTGTTAGAAAAGTGAAACGTGGCTCCTCTTGCTCTCAGAAGAAACACTCAAGTCAATCCTTTGCTGTTCTTCCTAACAAGATTTTGAAAGTCGAGGAATCACCATTGCATGAATTTTATGGTCACACCAGAGATGTCTTGGATTTGGCTTGGTCCAATTCAGATACTCTCCTTTCATCTTCTTCGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGTAATCAATGTCTAAGTGTTTTCCATCACAAAGACTATGTGACTTGCATTCAGTTCAACCCCGTTGACGAAAATTTCTTCATCAGTGGTTCCATAGATGGCAAAGTCCGAATATGGGGGATACATGAAGAGCGAGTTGTTGACTGGGCAGACATACGAGATGTGATTAGTGCAATAAGTTTCCGACCAGATGGACAAGGGTTTGTAGTTGGTTCCCTCACAGGCAATTGCCGCTTTTATGTTGTCTCAGGCAAACATTTCCAGCTTGATGCCCAAATTCGTGTCAATGGAAAGAAGAGAACATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCTGAAGATTCCAAAGTTAGAATATTGGAAGGCGTTGAACTTGTTCAAACATATAAAGGTCTTTCAAGGTCTGGAAGTCAGATGTCTGGTTCATTTACCTCTGGTGGAGAGCATATAATTTCAGTGGGAGGGGACTCTCGTGTGTATATTTGGAACTTCAATGACTTGGGAAATACTTCTCCCAAAAGTACAAAATCCAAGTATTCATGTGAGTACTTTGGCTCTCAAGGGGTTACTACTGCAATACCTTGGTCTGGCATGACTACAGAACAAGGTTCTGGCAAAGATTTTGCCCACTATTCTTCAGGAATGCAGCACCAACTAGAGGCTGCTCATGGTGTCAGGGAATCAGAACGTTTTTCTTTTGGAAGTTGGTTCTCCATTGATGGTACATGTCGGGGTTCTGTGACGTGGCCCGAAGAGAAGCTTCCTAGTTGGGATTTACCTCTTGCAGAAGTTGAATTTGATCACCAGAAGCCATGTATAAAAGATCCTTCCCATGAAAAGTACGTATCAGAAACATGGGGACTATCAATTGTGACAGCAGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCTATTAGGCTTTAG 1977 0.4239 MLISDEGGCDVFFDSVDCFSPIQASASTEEELGYEMWVNEPVSVKERRGKFLQGMGWDDGSSKVCAQENNMMNSDNSSVRFELERTSDSGAVSNTSSCILPYDRVSEELVLSGRETTSEAQDLFDDQKGGPQDKPDASSEEKIYEVSFTDEEIRHRKAEAREKKSWWQHFMSNKKGGWGKISSKLDSGPNKSRRIKVKQNKKRWMELSALYIGQEIRAHEGLIWTMKFSPNGQYLASGGEDGVIRIWRVTSLDTSSICFNAEDSAVRKVKRGSSCSQKKHSSQSFAVLPNKILKVEESPLHEFYGHTRDVLDLAWSNSDTLLSSSSDKTVRLWKIGCNQCLSVFHHKDYVTCIQFNPVDENFFISGSIDGKVRIWGIHEERVVDWADIRDVISAISFRPDGQGFVVGSLTGNCRFYVVSGKHFQLDAQIRVNGKKRTSGNKITGIQFSQKNHQRVMITSEDSKVRILEGVELVQTYKGLSRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDLGNTSPKSTKSKYSCEYFGSQGVTTAIPWSGMTTEQGSGKDFAHYSSGMQHQLEAAHGVRESERFSFGSWFSIDGTCRGSVTWPEEKLPSWDLPLAEVEFDHQKPCIKDPSHEKYVSETWGLSIVTAGCDGTIKTFHNFGLPIRL* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1532 658 SMART WD40_4 296 334 IPR001680 GO:0005515
Pvu9g1532 658 SMART WD40_4 209 248 IPR001680 GO:0005515
Pvu9g1532 658 SMART WD40_4 469 510 IPR001680 GO:0005515
Pvu9g1532 658 SMART WD40_4 378 417 IPR001680 GO:0005515
Pvu9g1532 658 SMART WD40_4 337 376 IPR001680 GO:0005515
Pvu9g1532 658 SMART WD40_4 432 468 IPR001680 GO:0005515
Pvu9g1532 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 335 - -
Pvu9g1532 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 257 IPR001680 GO:0005515
Pvu9g1532 658 MobiDBLite consensus disorder prediction 116 140 - -
Pvu9g1532 658 Pfam WD domain, G-beta repeat 339 375 IPR001680 GO:0005515
Pvu9g1532 658 Pfam WD domain, G-beta repeat 298 334 IPR001680 GO:0005515
Pvu9g1532 658 Pfam WD domain, G-beta repeat 215 247 IPR001680 GO:0005515
Pvu9g1532 658 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 658 - -
Pvu9g1532 658 MobiDBLite consensus disorder prediction 119 140 - -
Pvu9g1532 658 PRINTS G protein beta WD-40 repeat signature 235 249 IPR020472 -
Pvu9g1532 658 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Pvu9g1532 658 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Pvu9g1532 658 SUPERFAMILY WD40 repeat-like 212 648 IPR036322 GO:0005515
Pvu9g1532 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 385 IPR001680 GO:0005515
Pvu9g1532 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 343 IPR001680 GO:0005515
Pvu9g1532 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 251 - -
Pvu9g1532 658 PANTHER WD REPEAT DOMAIN 44 1 658 IPR040324 -
Pvu9g1532 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 343 375 - -
Pvu9g1532 658 Gene3D - 205 543 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1532 Pvu-Chr9 21700803 21704606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1532 300 421 Miscellaneous Gene Families AT5G08390 28.571 1.16e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1532 K20241 - gmx:100780979 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1532 9 21700803 21704606 Pvu9g1532 9 21700803 21704606 ECH
Pvu2g2781 2 43567352 43573169 Pvu9g1532 9 21700803 21704606 PCT