Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1531 ATGGTAAGAGCCAGAGACGATCTATGCATCAACGTTCCCACTTTCTTCAAGTGCCCTATTTCTCTTGATGTTATGAAATCACCTGTCAGCCTCTGCACCGGGGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCAACCATGCAACTTCTCCAAACAAAGGACTTCGTTCCCAACCGAACTTTACAAAGCCTCATTCAGATCTGGTCCGATTCCCTTCGCCACTCAACCGTTCCGCACCCCCTCCTCTCCCCGGACCAGGTCCTCCCAACCGTCGCTCAATTGGAAACTCACTCTCTCTGCTCCGCTTCGCTCACCAAACTGCTCCACTTCGCCAGAGATTCTCACCATAACAAACTCTTCCTTGCCAAACTAGAAGGCTTCGTCAACCAACTGCTTCGTTTCCTCGACAATGTCGACGGAGGACTCGTCGCCAGTGCTAATACTCAATTTCTCCAACAAGTCGTCATTCTGTTAGGTCTGATTCTTGATAGCGTCGAAGATCGCGATGGATTGAGAAACTCTTTGCTCAAAGGAAACAAACAAAGCCTAGATTCTCTGCTTCTCGTTCTGCAACGAGGATGCTGCGAATCGAGAATCGCCTCCGCTAGGGTTCTGCAATTCATCGCCGCGGACGCGGAGTCGAAGATTTTAATCGCGGAGAAGGAAGGCGTGGTGGCCGAGTTGCTGAAGTCGGCGGCGCCGGAGAAAGATCCGGCGCTGGTCGAGGCCGCGCTGGCGAGCCTGGTCGCGATTTCGACGCCGAAGCGGAACAAGCTGAAGCTGGTGAGTCTCGGCGCGGTGAAGGCGCTGTCGAGGCTGTTGGCGGAGGCGAAGCTGGGCGCGGCGGCGGTGGAGAAGGTGCTTAAGCTGGTGGAGACGGCGTCGTCGACGAGGGAGGGGCGGAAGGAGATATGCGAGGACGCAGCGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGAGCGTGGCGACGGAGCATGCGGTGACGACACTGTGGAGCGTGTGCTACCTGTTTCGCGATCGCAAGGCGCAGGAGGCAGTGACTCAGGCCAATGGCTTGACCAAGATTCTGCTGCTGATGCAGAGCAATTGTGCGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCATGCCTCTCCTGCTATGACACCAAGACCACGCATATCATGCCGTTTTGA 1239 0.5626 MVRARDDLCINVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLQTKDFVPNRTLQSLIQIWSDSLRHSTVPHPLLSPDQVLPTVAQLETHSLCSASLTKLLHFARDSHHNKLFLAKLEGFVNQLLRFLDNVDGGLVASANTQFLQQVVILLGLILDSVEDRDGLRNSLLKGNKQSLDSLLLVLQRGCCESRIASARVLQFIAADAESKILIAEKEGVVAELLKSAAPEKDPALVEAALASLVAISTPKRNKLKLVSLGAVKALSRLLAEAKLGAAAVEKVLKLVETASSTREGRKEICEDAACVAAVLSKVLKVSSVATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1531 412 PANTHER WDSAM1 PROTEIN 6 412 IPR045185 GO:0061630
Pvu9g1531 412 SUPERFAMILY ARM repeat 111 392 IPR016024 -
Pvu9g1531 412 Gene3D - 187 405 IPR011989 -
Pvu9g1531 412 SUPERFAMILY RING/U-box 6 80 - -
Pvu9g1531 412 CDD RING-Ubox_PUB 16 58 IPR045210 -
Pvu9g1531 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Pvu9g1531 412 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Pvu9g1531 412 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Pvu9g1531 412 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 6 412 - -
Pvu9g1531 412 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1531 Pvu-Chr9 21666543 21668545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1531 5 412 U-box Gene Family AT5G64660 51.435 1.24e-145 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1531 - - gmx:100801033 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1531 9 21666543 21668545 Pvu9g1531 9 21666543 21668545 ECH
Pvu9g1531 9 21666543 21668545 Pvu2g2780 2 43523418 43525298 ECH
Pvu2g2780 2 43523418 43525298 Pvu9g1531 9 21666543 21668545 PCT