Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1526 ATGTATTCTGCTGCAACTTCCTTTACTTCACCACTCCACCATGACCTTCACAGCTTCCACTCAAGAAGGTTACTCCTTCACTCCCCACTCAACCAATCAGCCAAGCCCCCAGCAAGCAGCCACGATTCCACAGAAACATATCTTGGAGATGGAAATTTCGATGCAAATGTTGTCATGGTACTCTCAGTCCTACTATGTGCACTCATCTGCTCCTTAGGTTTGAACTCCATCATCAGGTGTGCACTAAGGTGTTCCAATTTCGTAGTGAGTGACTCGGTGGCAACCAGCAGCCCTCCAGCAAGAGTTGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGAGTTACTCAGCTGAGCTGAACCTCCCAAGTTTGGACTCAGAGTGTGTCATATGTTTGTCAGAGTTCTCAAATGGTGACAAGGTGCGCATTTTGCCAAAGTGCAACCACGGGTTCCACGTACGCTGCATTGACATGTGGCTAAGCTCACACTCTTCATGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAAAAGATTGTTGGGTGCAGTCAGCAGCAAGCTAGCTCCTCTCAACAACCAGTGTTGCAGGTGCCAGAAACCATTCTCACCATAACGCCACTGGACCCAGAAGGTTTGGTGCGTAACTATAGGGAACCTCGCTAA 681 0.489 MYSAATSFTSPLHHDLHSFHSRRLLLHSPLNQSAKPPASSHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATSSPPARVANTGVKKKALKTFPTVSYSAELNLPSLDSECVICLSEFSNGDKVRILPKCNHGFHVRCIDMWLSSHSSCPKCRQCLIETCQKIVGCSQQQASSSQQPVLQVPETILTITPLDPEGLVRNYREPR* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1526 226 PANTHER RING-H2 FINGER PROTEIN ATL78 5 224 IPR044602 GO:0016567|GO:0016740
Pvu9g1526 226 SMART ring_2 133 174 IPR001841 -
Pvu9g1526 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
Pvu9g1526 226 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Pvu9g1526 226 CDD RING-H2_EL5_like 132 175 - -
Pvu9g1526 226 Pfam Ring finger domain 132 175 IPR001841 -
Pvu9g1526 226 PANTHER RING-H2 FINGER PROTEIN ATL78 5 224 - -
Pvu9g1526 226 SUPERFAMILY RING/U-box 111 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1526 Pvu-Chr9 21623693 21624373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1526 23 179 C3H Transcription Factor Family AT3G10910 46.626 2.32e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1526 K19040 - gmx:100787934 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1526 9 21623693 21624373 Pvu9g1526 9 21623693 21624373 ECH
Pvu2g1219 2 23903722 23904736 Pvu9g1526 9 21623693 21624373 ECH
Pvu2g2772 2 43437470 43438144 Pvu9g1526 9 21623693 21624373 PCT