Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1524 ATGCTGCAAATCTCTACTTCACCGGAAACCCCTCTTGCGAATCCGGAGGGAGACGCCGCGCCGGTCTCCGAGGGCCTGAAACCGGAGCACGGCGAAGACGGTGACCGGAATTCCGCCGCGAGCCGGTGGCCTAAAGAGGAGACAATGGCTTTGCTCAATATAAGGTCTGACATGGACGTTGCTTTCAGAGACACAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTAGCTGAGCTAGGATATATCAGGAGTGCGAAGAAGTGCAGGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAATCAAGGAAGGTCGTAGTGGCAAATCCAACGGTAGCAAGACTTATAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTTCTCCCTCCTTCTGTAAGCGACCCAGAAACCACTACGACAACAACAACCCACGTGCCCCACAACAAAATCAACCCCAGCAACAACTTTGATGTTATTTTAGATGCGGTTCCGTGTTCCGTAAGTGCTTACGCGGGGGAGCATTCTAGTTCGACGACTTCGTGTTCGGGGAAGGAGTTTAGGAAGAAGAAGCTGACGCGGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGGAAGTTCATGGAGGTGTTGGAGAAGTGCGAGAAGGATCGAGTGGCGAGGGAGGAGGCTTGGAAGAAGGAGGAGCTGGCCCTGATTAAGAAAGAGCGGGAGCTTCTGGCTCAGGAACGCTCAATCGCGGCGGCTAAAGATGAAGTCGTCCTTGCTTTTCTAAGAAAGTTCGCCCAAGCTGAAGGCACGGTGCAGTTGCTGGAGAAAATTCAGGTTCAAAACGACAAGCACAGGAACATGCAACAAAGTGGGAATATTAATTTTAGTGCTAATGGAGGTGGTGATGTGAGTGATGTGGATAAGCGAGAGTGTGGAAATAATTTGAGTGTTAGGAATTTCGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGCTGAGGACTCAACTTGATGTGCAGTCCCAAGGGAACAGTAACAGTAGTAACGGTGTGTCAAAGGGGCCTCTTTGGGAGGAAATATCTTTGGCCATGAAGGGCCTTGGCTACAATCGCAGTGCGAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCCGAGGATTCCAAAACATGTCCCTATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCCAAGAGGGTGGATGTAAATGATTTTGGGAAGCAGTTGAAGCCCGAGGAGCTCTTGATGCATATCATGGAAAGTCAAAGTCAAGAAGAGAGACAAGCGCAGGAACAACAACAGCTACAGAGTCAGTCATCATCTGAACATGACGAGAGAGAGAATAGGGATAAGCATGAGGAAGATGATGAAGATCAAAATGGGTTTCAGGATGTGATGGTTGAAGATAGTCCTTCCATAACAATTATGAGTTAA 1545 0.4822 MLQISTSPETPLANPEGDAAPVSEGLKPEHGEDGDRNSAASRWPKEETMALLNIRSDMDVAFRDTNPKAPLWEQVSRKLAELGYIRSAKKCREKFENIYKYHRRIKEGRSGKSNGSKTYRFFEQLEALEGHHSLLPPSVSDPETTTTTTTHVPHNKINPSNNFDVILDAVPCSVSAYAGEHSSSTTSCSGKEFRKKKLTRFLEGLMREVIEKQETLQRKFMEVLEKCEKDRVAREEAWKKEELALIKKERELLAQERSIAAAKDEVVLAFLRKFAQAEGTVQLLEKIQVQNDKHRNMQQSGNINFSANGGGDVSDVDKRECGNNLSVRNFVHMSSSRWPKDEVEALIRLRTQLDVQSQGNSNSSNGVSKGPLWEEISLAMKGLGYNRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEVLYSKKPKRVDVNDFGKQLKPEELLMHIMESQSQEERQAQEQQQLQSQSSSEHDERENRDKHEEDDEDQNGFQDVMVEDSPSITIMS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1524 514 Gene3D - 43 104 - -
Pvu9g1524 514 Gene3D - 338 405 - -
Pvu9g1524 514 MobiDBLite consensus disorder prediction 477 495 - -
Pvu9g1524 514 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Pvu9g1524 514 PANTHER - 1 512 - -
Pvu9g1524 514 CDD GT1 41 106 - -
Pvu9g1524 514 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 512 - -
Pvu9g1524 514 MobiDBLite consensus disorder prediction 458 514 - -
Pvu9g1524 514 MobiDBLite consensus disorder prediction 138 156 - -
Pvu9g1524 514 MobiDBLite consensus disorder prediction 133 156 - -
Pvu9g1524 514 MobiDBLite consensus disorder prediction 23 42 - -
Pvu9g1524 514 ProSiteProfiles Myb-like domain profile. 336 400 IPR001005 -
Pvu9g1524 514 Pfam Myb/SANT-like DNA-binding domain 336 427 IPR044822 -
Pvu9g1524 514 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Pvu9g1524 514 Coils Coil 245 265 - -
Pvu9g1524 514 CDD GT1 336 407 - -
Pvu9g1524 514 MobiDBLite consensus disorder prediction 1 44 - -
Pvu9g1524 514 MobiDBLite consensus disorder prediction 458 476 - -
Pvu9g1524 514 SMART sant 39 101 IPR001005 -
Pvu9g1524 514 SMART sant 334 402 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1524 Pvu-Chr9 21581464 21584492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1524 35 435 Trihelix Transcription Factor Family AT1G76880 44.053 6.47e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu9g1524 Myb_DNA-bind_4 8.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1524 - - pvu:PHAVU_009G147500g 984.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1524 9 21581464 21584492 Pvu9g1524 9 21581464 21584492 ECH