Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1517 ATGGATTTGGACGATTTCCGATCCATATTGGACACCTCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGACTGCGCCGCGGAATTGAAGCGCCGCCGCGACTCCATCGTGGAAAGCCTCTACTCCGCCACGGCCGCGCCTCCGCGGTGCCGCAATTGTGACGACGGCCACCTCCTCAGGACCAACGGCCACCAAATCACGAAGCAGAACAGCCCTAGCCCTAGCCCCGTGCGGCAGCCTCACCGACGCCGTGCCGCCGAAGCCGCCAATTCCCCCGCCACGCCGCAGTCTCTGGAAAACGATGACGGCGGCGAGGATTTGGATCCTTACGGTGGTCTGTTCGACGACGAACAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGAGCCTGATCAGTCTGAAGATTCCTTGGTGGAGTTGCTGCAAAGCCTCGCGGACATGGATATTACATTCCAGGCTTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGTCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGCTGAAACCACAGGGAGGAAGGGACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGTAGCTCAGGGTCTGACCGTAACAACTCCGAAGCAGAACACAAACCGAAAGTAATTCCCCGCAGTGAACCTCGGCCAAAACCGACGCCAGCACCGTCAATTTCAACCCCTGCTTCCGCTTCTCAAAACAGACAAAGAGACAGCAGTTTTGACGCGGAGAGGCTTGCTTCAGCCAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTTATGGATATCAACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1062 0.5424 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDSIVESLYSATAAPPRCRNCDDGHLLRTNGHQITKQNSPSPSPVRQPHRRRAAEAANSPATPQSLENDDGGEDLDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLKPQGGRDTLMADGDSPVQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRPKPTPAPSISTPASASQNRQRDSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1517 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 IPR044790 -
Pvu9g1517 353 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Pvu9g1517 353 MobiDBLite consensus disorder prediction 69 84 - -
Pvu9g1517 353 MobiDBLite consensus disorder prediction 290 318 - -
Pvu9g1517 353 MobiDBLite consensus disorder prediction 251 265 - -
Pvu9g1517 353 CDD TFIIS_I 125 198 - -
Pvu9g1517 353 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 207 IPR035441 -
Pvu9g1517 353 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Pvu9g1517 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 - -
Pvu9g1517 353 MobiDBLite consensus disorder prediction 207 353 - -
Pvu9g1517 353 SMART TFS2_5 128 199 IPR003617 GO:0005634
Pvu9g1517 353 Coils Coil 295 322 - -
Pvu9g1517 353 MobiDBLite consensus disorder prediction 61 119 - -
Pvu9g1517 353 MobiDBLite consensus disorder prediction 217 231 - -
Pvu9g1517 353 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 208 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1517 Pvu-Chr9 21492168 21495174 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu9g1517 Med26 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1517 - - gmx:100804034 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1517 9 21492168 21495174 Pvu9g1517 9 21492168 21495174 ECH
Pvu9g1517 9 21492168 21495174 Pvu2g2764 2 43384681 43386969 ECH
Pvu2g2764 2 43384681 43386969 Pvu9g1517 9 21492168 21495174 PCT