Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1513 ATGGACTTTGACGAGTACGAGTACTTGGAGAAGACAGTGGAGGAACAAGAGGACCGTGACTCAAGCAGGAAGAAGAAAGAGACTGAAAGGAGCTACAGGAAGCGCGATGGGATCGACGACGGCTCCGAGGAGAGGAAGAACAAGAGGTCAAGGGGAGACGACGAGAATGGCTCTAAGAAGGATAGAGATCGCGAAGAGCGCGACAGAAGTAGCAGGGATAGAGATAGAGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGGGACAGGAACAGAGACAGAGATAGAGATAGGGAAAAGGAGGGAGACAAGGAGAGGGATCGGAGGGACAGAGACAAAGAGAGGGAGAAGAGGGAGAAAGAGAGGGAAAGGGACAGAGATAGGGAAGGAGAAAGAGACAGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGATAGAGAAAGAGATACGAGGGAACGGGATTTCGACACCAGAGATACGAGGGAACGGGATTTCGACACCAGAGATACGAGGGAACGGGATTTCGACACCAGAGATACCAGGGAACGGGCTTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGATGCGGCGGAGCCTGAGGCAGATCCAGAAAGGGACCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGACAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCAGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGATAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAATATGTCAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAGCTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTTCCTGTTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATGATGCCTATTGGTAATCCAGGCGTAATACCAGCATCAACTGTCCCGATGCAAGTTGTGCCTACCCCAGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCAAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGATGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAGCATATTTATGTTGACAAAAGAAGTACAGGTTTTGTGTATTTGCAGTTTGAAACAGTCGAAGCAGCTAGTGCTGCCCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATTTACGATGCCAAGTTTAAAGGGGACGACGCTTGA 1779 0.4744 MDFDEYEYLEKTVEEQEDRDSSRKKKETERSYRKRDGIDDGSEERKNKRSRGDDENGSKKDRDREERDRSSRDRDRDRDRDRDGERSSRDRNRDRDRDREKEGDKERDRRDRDKEREKREKERERDRDREGERDRDRDRRDKEREERERSRRSRSRSERDRERDTRERDFDTRDTRERDFDTRDTRERDFDTRDTRERAFDTRDTRRFRDKKDAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGIVGPYGAVDRKLYVGNLHFNMSESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVIPASTVPMQVVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSTGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPQIYDAKFKGDDA* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1513 592 MobiDBLite consensus disorder prediction 12 171 - -
Pvu9g1513 592 Gene3D - 493 591 IPR012677 -
Pvu9g1513 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 580 IPR000504 GO:0003723
Pvu9g1513 592 SUPERFAMILY RNA-binding domain, RBD 328 405 IPR035979 GO:0003676
Pvu9g1513 592 CDD RRM2_RBM23_RBM39 330 402 - -
Pvu9g1513 592 MobiDBLite consensus disorder prediction 204 224 - -
Pvu9g1513 592 MobiDBLite consensus disorder prediction 1 171 - -
Pvu9g1513 592 Gene3D - 219 312 IPR012677 -
Pvu9g1513 592 Gene3D - 324 420 IPR012677 -
Pvu9g1513 592 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 181 590 - -
Pvu9g1513 592 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 177 - -
Pvu9g1513 592 SUPERFAMILY RNA-binding domain, RBD 494 579 IPR035979 GO:0003676
Pvu9g1513 592 PANTHER CC1-LIKE SPLICING FACTOR 1 177 - -
Pvu9g1513 592 PANTHER CC1-LIKE SPLICING FACTOR 181 590 - -
Pvu9g1513 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 303 IPR000504 GO:0003723
Pvu9g1513 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 406 IPR000504 GO:0003723
Pvu9g1513 592 SUPERFAMILY RNA-binding domain, RBD 219 306 IPR035979 GO:0003676
Pvu9g1513 592 TIGRFAM SF-CC1: splicing factor, CC1-like family 110 587 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pvu9g1513 592 CDD RRM3_RBM39_like 496 578 - -
Pvu9g1513 592 CDD RRM1_RBM39_like 227 299 - -
Pvu9g1513 592 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 421 515 IPR029123 -
Pvu9g1513 592 Coils Coil 105 125 - -
Pvu9g1513 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 400 IPR000504 GO:0003723
Pvu9g1513 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 573 IPR000504 GO:0003723
Pvu9g1513 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 295 IPR000504 GO:0003723
Pvu9g1513 592 SMART rrm1_1 329 402 IPR000504 GO:0003723
Pvu9g1513 592 SMART rrm1_1 227 299 IPR000504 GO:0003723
Pvu9g1513 592 SMART rrm1_1 498 576 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1513 Pvu-Chr9 21425978 21433174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1513 300 401 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 5.66e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1513 K13091 - gmx:100802446 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2757 2 43322959 43329824 Pvu9g1513 9 21425978 21433174 ECH
Pvu9g1513 9 21425978 21433174 Pvu9g1513 9 21425978 21433174 ECH
Pvu2g2757 2 43322959 43329824 Pvu9g1513 9 21425978 21433174 PCT