Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1508 ATGTCTCCACCATTACTGGGCATAGGGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTCAAGACCTTAGAATTAAAAGAACGCAACTACATGGGCTTATCTGATTGTTCTTCTGTGGACAGCTCAGTTCCGTCCGTCTCAGAAGAGACTAAAAGTAATCTGAACCTGAAAGCCACTGAGCTCACGCTTGGGCTTCCGGGATCACAGTCCTCTGAAAGAGATTCCGATCTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAAGCCTTGTTTCCTTTGTGTCCTTTGGCTGATGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAACAAGAGAGGATTTTCAGATGCCATGAATGGCTTCTCAGAGGGGAAGTTCCTAGTTGATTCGGAGGCCAATCCGATACTATCTCCCAGGCCGGCTTCGAACTTGGGACTAAATCCTGGTTCTACACTTGAGAAGGCTGGGGCTCTGCAAAACAAAATGAAAGAAACAGCAACAACAAAGATGGGGCTCGATAGGCCTCATTCTGCCAATGAAACTAGACCAAGTATTCATTGTTCTGCTAATAATAACAACAGTGCACCGGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGGAAAAGTGGGGGTTGGTGCACTGTTCATCAAAGTCAGTATGGATGGGGCTCCCTATTTAAGGAAAGTAGACTTGAATAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAGAAGATGTTCAGCTGTTTTACTATAAGTCAATGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTACTGAAACTTGCAAGAGGCTAAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCTAGGACTGTTGAAAAAAGTAAGAGCAGGACCTAG 1101 0.4387 MSPPLLGIGEEGKSNVTLLVSSSTTMESVCLKTLELKERNYMGLSDCSSVDSSVPSVSEETKSNLNLKATELTLGLPGSQSSERDSDLCLRSSTQFDEKALFPLCPLADDHHSSTKTAVLGNKRGFSDAMNGFSEGKFLVDSEANPILSPRPASNLGLNPGSTLEKAGALQNKMKETATTKMGLDRPHSANETRPSIHCSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDGKVGVGALFIKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTETCKRLRIMKSSDAIGLAPRTVEKSKSRT* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1508 366 ProSiteProfiles PB1 domain profile. 246 348 IPR000270 GO:0005515
Pvu9g1508 366 PANTHER AUXIN-INDUCED PROTEIN 17 360 - -
Pvu9g1508 366 Pfam AUX/IAA family 70 357 IPR033389 -
Pvu9g1508 366 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 360 IPR003311 GO:0005634|GO:0006355
Pvu9g1508 366 Gene3D - 241 360 - -
Pvu9g1508 366 SUPERFAMILY CAD & PB1 domains 246 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1508 Pvu-Chr9 21341565 21346686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1508 249 351 B3 DNA Binding Superfamily AT2G46530 34.951 2.17e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu9g1508 AUX_IAA 7.8e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1508 K14484 - gmx:100783314 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1508 9 21341565 21346686 Pvu9g1508 9 21341565 21346686 ECH