Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1506 ATGGAGCACTGTGACCAGGATTTCTTGGAGGAATTGATGACTCTGAGAAGAGAAACATGGGACACCAATCCAAGTACAGAAGAAAACCAGTTCTTCTGTAATGGCTGGAGTAGTTTTGATTGTTTTGATCAAAACTCTCTACCTTACCTCCCGAACTCTTCTTCTTCTCAACAAGTTCCTCAAAGCTACAACGAATACTACCCCTTCAATGAAATCTATGGCTCTTTACTCGATGAAACCTCACCACAGATTATTGATTCATACTATAGTACCCTTCAAACTCCACTCAATACCCTTGGTCAAGAGGATTATCCATTGTCCATTATGGAAGAAGAGGACCCCGGTATGCTTGGGGAAGAGCTTAAGAATTTGGAGCTGCAAGCCACATGCAAGGCGGAACCATCTCAATCCTCTGAAATGCCAGTTTTCAACATGGGAACGGGTCTGGAAAGAAAGAATCGGTCAAAGAAGCTTCAGGGACAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGAAAGAGATTAAATGACAGGCTCTCAATGCTGAGAGCAATTGTCCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAGCTTCTGGAGAAGATCAACAATCTTCAACAAGAAGGAGAACTAGATTCTAAAATGGCTGCCATTTTCAAAGATGTAAAGCCAAATGAAATCCTAGTGAGAAATTCACCCAAGTTTGAAGTGGAGAGGAGTGTGGACACACGGGTGGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTACAATCAACAGTAAACACTCTGGAGGCGTTAGGCCTTGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGCTCAGAGGAATCGGAACAAAGGGCAATGCTGAGTTCTGAAGATATAAAGCAAGCATTGTATAGAAGTGCAGGGTATGGAGGAAGGTGTTTGTGA 987 0.4215 MEHCDQDFLEELMTLRRETWDTNPSTEENQFFCNGWSSFDCFDQNSLPYLPNSSSSQQVPQSYNEYYPFNEIYGSLLDETSPQIIDSYYSTLQTPLNTLGQEDYPLSIMEEEDPGMLGEELKNLELQATCKAEPSQSSEMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEGELDSKMAAIFKDVKPNEILVRNSPKFEVERSVDTRVEICCAGKPGLLQSTVNTLEALGLEIQQCVISCFNDFTMQASCSEESEQRAMLSSEDIKQALYRSAGYGGRCL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1506 328 PANTHER DNA BINDING PROTEIN 4 328 - -
Pvu9g1506 328 MobiDBLite consensus disorder prediction 150 172 - -
Pvu9g1506 328 SMART finulus 166 215 IPR011598 GO:0046983
Pvu9g1506 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Pvu9g1506 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 221 IPR036638 GO:0046983
Pvu9g1506 328 Coils Coil 199 219 - -
Pvu9g1506 328 CDD ACT_UUR-ACR-like 254 317 - -
Pvu9g1506 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 328 - -
Pvu9g1506 328 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Pvu9g1506 328 Gene3D - 168 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1506 Pvu-Chr9 21317021 21318967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1506 151 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.889 1.30e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g1506 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1506 - - gmx:100784380 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1506 9 21317021 21318967 Pvu9g1506 9 21317021 21318967 ECH