Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1497 ATGTCCGGCCCAGGGGTACGGCTGCACATCCAAGATCACCATGTGGTGATGGATAATGGCATAGTCCAGGTTACGTTATCAAATCCAGGTGGGATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTGGAAGTTCTCAACAAGGAGTCTAATAGAGGGTATTGGGACCTCGTTTGGAGTGCGCCAGGAACCAAAGGGATCTTTGATGTGATTCAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCTTTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAATTTGTCCCCTTAAATATTGACAAAAGATTTATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTACGGAATTTATGAACACTTAAATGGATGGCCAGATTTTGATCTCAGTGAAACAAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGACGAAGGATTCTTCCTTATCCAGAAGATCGGTTACCAGGAAGATGCCAAACCTTGGGCTATGCAGAAGCTGTCCTACTAACCAACCCCAAAGACCCACAATTGCAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGCAAACATGGATAATCGAGTCCATGGGTGGATATCTTTCAATCCACCAGTTGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCCGGTGGACCCCTTAAACAGAATTTGACCTCACACGTAGGCCCCACCACACTTGCAATGTTTCTTAGTAGTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGGTGGTGAATCATGGAAGAAGGTTTTCGGTCCTGTATATATTTATCTCAATTCTGCAGCAGTCAGTGATGACCCACTTTGGTTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATTATTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAACGGGGCAACATCAGTGGCAGATTACTTGTCTTAGACAAGTACATCTGCACAGACTTAATATCAGCAAATGGAGCTTATGTTGGTCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAACGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTGCCTGGCTTTGTTGGGGACTACAAATTTGTAGATTTCATGAAGATAACGCCAGGTTCTTACACTGAATTAGGTGAACTTGTATACGAGCCTCCAAGAGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCTGCTGCAGAATTTTATGCTCCTGATCCCAATCCCCAATATATGAATAGGCTTTTTATCAACCACCCAGACAGGTTCAGGCAGTATGGACTGTGGGACAGGTATACAGAATTGTATCCTGCTACAGATTTGGTTTACACAGTTGGTGTTAATGACTATAGGAAGGACTGGTTTTATGCGCAGGCTCCGAGGAAAAAAGAGGATAACACTCTCCAAGGGACAACTTGGCAAATCAAGTTCGAACTCAGTGGCGTGGTTCGGGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACCTTAGCTGAATTGCAGGTTAGAGTAAATGATCCCAATGCCGGGCGACCCTTATTTACCAGTGGATTAATTGGAAGGGACAACTCAATTGCAAGACTTGGAATTCATGGAATCTATTGGCTTTACAATGTGAGTATACCAGGTTCTCTTCTTATTGATGGCACAAATACCATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAAGGTATCATGTATGATTATATTCGTTTGGAAGGTCCACCTTGTGAAGGAATTTAA 1911 0.427 MSGPGVRLHIQDHHVVMDNGIVQVTLSNPGGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGTKGIFDVIQGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFQYMAMADNRRRILPYPEDRLPGRCQTLGYAEAVLLTNPKDPQLQGEVDDKYQYSCANMDNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKIRGGESWKKVFGPVYIYLNSAAVSDDPLWLWEDAKIQMMNEVQSWPYYFPASEDFLKSDQRGNISGRLLVLDKYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFVDFMKITPGSYTELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYMNRLFINHPDRFRQYGLWDRYTELYPATDLVYTVGVNDYRKDWFYAQAPRKKEDNTLQGTTWQIKFELSGVVRGSTYKLRVAIASATLAELQVRVNDPNAGRPLFTSGLIGRDNSIARLGIHGIYWLYNVSIPGSLLIDGTNTIYFTQPRCTSPFQGIMYDYIRLEGPPCEGI* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1497 636 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Pvu9g1497 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Pvu9g1497 636 CDD RGL4_N 6 292 - -
Pvu9g1497 636 Gene3D - 8 305 IPR014718 GO:0030246
Pvu9g1497 636 CDD RGL4_M 331 430 IPR029413 -
Pvu9g1497 636 SUPERFAMILY Galactose mutarotase-like 14 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pvu9g1497 636 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Pvu9g1497 636 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Pvu9g1497 636 Gene3D - 328 426 - -
Pvu9g1497 636 Gene3D - 438 629 - -
Pvu9g1497 636 CDD RGL4_C 442 629 - -
Pvu9g1497 636 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Pvu9g1497 636 SUPERFAMILY Starch-binding domain-like 330 428 IPR013784 GO:0030246
Pvu9g1497 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1497 Pvu-Chr9 21236695 21243704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1497 1 632 Polysaccharide Lyase AT1G09910 70.570 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1497 K18195 - gmx:100814185 1235.71