Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1495 ATGGACTTCACTTATCACTTCCTGTTCTTGATGATGCTGCAATTCCTCGTGGCTCTGGGAGCTGATACCAAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCAAATCCTGGAGGGATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGAAGAATACGACAGAGGGTACTGGGATATTGTATGGGACCAAGGTGGAGAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTACATTTGACAGAATGGAAGCCACAAATTTAACGGTGATAGTGGAAAACGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGTCTCTTTTGTGGGGAAACTTCCGCCACTCAATATTGACAAGAGGTTTATAATGCTTCGTGGTTCTTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAGCCTAGGAAAGAGAAGTTCCATTACATGTCTGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCCGATGACCGAATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCTGAATTCAAAGGCGAGGTGGATGATAAATATGAGTATTCGTGCGAGAGTCGATACAATCAAGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACTGGATTCTGGCTAATTACTCCAAGCTATGAGTTCCGATCTGCTGGACCCCTGAAGCAATATCTTACTTCTCATGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGACGGATCTGATAATGCAATTTGGACCTAATGAGCCGTGGAAGAAAGTCTATGGCCCCATATTCATATACCTTAATTCTCTATCTAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAGTGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCCAAGGACTTTCTCTCATCTGAGGAACGAGGTAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGGATTGTCAGTGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACGTACGACCTGGGGACTATAATCTTTACTCCTGGGTCACTGGATACATTGGTGATTATAAATTCGATAAAATCATCAACGTAACTTCAGGTTGTGAAATTAATGTGAGTGAGCTTGTTTATGAGCCACCTAGAGATGGTCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAACCATACAGACAGGTTCAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAAAAAAGATTGGTTCTTTGCTCAGGTTAATAGGAGGAAAGATAATGGCACTTACCAAGGAACCACATGGCAAATTAACTTCAACCTTGATCGGGTGAATACCAATGGAAGCTACACATTGCGAGTGGCTCTGGCATCTGTGCATGGTGCTGAATTACAGATTCGGATAAACAAATTAGAAGCAGATCCAGCTTTATTTTCAAGTGGAGTAATTGGAAAGGAGAATACAATAGCTAGACATGGAATTCACGGTTTCTACTGGCTATTCAGCATTGATGTAGACGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTTTAACGCAACCAATGAACACAAGTCCTTTTATAGGAATTATGTACGACTATATTCGTTTGGAATATAAACGCTGA 1995 0.4256 MDFTYHFLFLMMLQFLVALGADTKPGVRLDIQDKHVIMDNGIVQVNLSNPGGIVTGIQYNGIDNLLEVLNEEYDRGYWDIVWDQGGENRTKKGAKGKGTFDRMEATNLTVIVENEEQVELSFTRTWNVSFVGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKEKFHYMSVADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYEYSCESRYNQVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMQFGPNEPWKKVYGPIFIYLNSLSNGVSPIKLWEDAKQQMVSEVESWPYTFPASKDFLSSEERGKVQGRLLVRDRIVSDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGYIGDYKFDKIINVTSGCEINVSELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYKKDWFFAQVNRRKDNGTYQGTTWQINFNLDRVNTNGSYTLRVALASVHGAELQIRINKLEADPALFSSGVIGKENTIARHGIHGFYWLFSIDVDGTLLVQGNNTIFLTQPMNTSPFIGIMYDYIRLEYKR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1495 664 Gene3D - 360 460 - -
Pvu9g1495 664 CDD RGL4_M 363 462 IPR029413 -
Pvu9g1495 664 Gene3D - 110 311 IPR014718 GO:0030246
Pvu9g1495 664 Pfam Rhamnogalacturonate lyase family 26 230 IPR010325 -
Pvu9g1495 664 Pfam Polysaccharide lyase family 4, domain III 472 660 IPR029411 -
Pvu9g1495 664 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
Pvu9g1495 664 CDD RGL4_C 474 661 - -
Pvu9g1495 664 Gene3D - 470 661 - -
Pvu9g1495 664 CDD RGL4_N 32 323 - -
Pvu9g1495 664 SUPERFAMILY Galactose-binding domain-like 469 662 IPR008979 -
Pvu9g1495 664 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 664 - -
Pvu9g1495 664 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 664 - -
Pvu9g1495 664 SUPERFAMILY Starch-binding domain-like 366 459 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1495 Pvu-Chr9 21135575 21140251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1495 27 661 Polysaccharide Lyase AT1G09890 65.361 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1495 K18195 - gmx:100786488 1233.01