Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu9g1494 | ATGGCTCCTGCACCTTCCTTCACTCTCTCCCTCTTCCTCCTCCTCACTCTCCTCCTGCTCCTTACACACGCAGCACAGTCCAGAGAAACTCCACCTCCAACTCCCCATCGAATCATTGCTCCACCACCGCCCGACAACGACAATGACAACTCGCCGCCGTTCAGACCAGGCATAGCGGTGGTGGTCTGCGTTTTGACCACCATAATCTCCCTCACGTCGCTGCTCCTCCTCTACATCAAACACTGCAACGGCGGCGCCATCCACGGCGGCGGAAGCGGCGGGAGCTCGATTCCGTGGACGGTGTCGCCTTTCGCCGGGAGAAAGAACTCCGGCATTGACCGGTCCGTGGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGAGGACAGAAGGAAGGGCTGGACTGCGCGGTGTGTCTGACGAAGTTCGAGGCGGCGGAGGTTCTGCGGCTGCTGCCGAAGTGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTGGACGCGCATTCAACGTGTCCTCTCTGCCGCTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGGCATTCCGGCAAAGTCAGCAGCAACGGAACAGCCACAACAACAACGAGGAACGCGTGCGATTAAATTTGGACGTGGAGAAGCAGGAGATTGTGGAGTGTGGGCGGAGGCATTCGTCAGTGGGCGAGAGGGGAACAGAGGAGCAGAGTCGGAGGTGGACGTCGTCGTTTAGGAGGTCGTTGGATAGCGCGACATCCAAGAAAAAAAACGAGAGCGTTGGTGTTGTTGGCATTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGCTGTTGACGCAAGAAACGGAGAGGGAGGGAGATAGGACAAGCGTGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGCCCAGGGAAAATGAATGGGGTCCAGCAGCGATGGAGCGACGTGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGTGAATCGCAATGGAACACGCGCCGCGGAGGAAGAGGAAGAGGAAGAGGAAGGGGAAGGAGGAGGAGCCGTACGAATGATGATGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATGGCAATAATAATAACGAGGAGGACAGAGACAGAGACAGAGACAGAGAGTGGGAGCAACAAAGGACAGGGAGAGAGAGAGAAGAGGGACTGGTGAGAAGGTGGTTGGGTTGGATTTCAAACTCACGCACACAACAAACCCAACCAGCTGTACGGTAA | 1341 | 0.5645 | MAPAPSFTLSLFLLLTLLLLLTHAAQSRETPPPTPHRIIAPPPPDNDNDNSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGAIHGGGSGGSSIPWTVSPFAGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKAFRQSQQQRNSHNNNEERVRLNLDVEKQEIVECGRRHSSVGERGTEEQSRRWTSSFRRSLDSATSKKKNESVGVVGIGWFVRGRKDGMLLTQETEREGDRTSVERRLEHRIIVSPGPGKMNGVQQRWSDVQASDLLYLTSEMIMSESQWNTRRGGRGRGRGRGRRRSRTNDDEVEDSWSGRGIINSRSVSEITGLSRFSSNGNNNNEEDRDRDRDREWEQQRTGREREEGLVRRWLGWISNSRTQQTQPAVR* | 447 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu9g1494 | 446 | SMART | ring_2 | 137 | 178 | IPR001841 | - | |
Pvu9g1494 | 446 | ProSiteProfiles | Zinc finger RING-type profile. | 137 | 179 | IPR001841 | - | |
Pvu9g1494 | 446 | PANTHER | RING-H2 FINGER PROTEIN ATL43 | 22 | 439 | - | - | |
Pvu9g1494 | 446 | MobiDBLite | consensus disorder prediction | 398 | 417 | - | - | |
Pvu9g1494 | 446 | MobiDBLite | consensus disorder prediction | 26 | 51 | - | - | |
Pvu9g1494 | 446 | MobiDBLite | consensus disorder prediction | 34 | 50 | - | - | |
Pvu9g1494 | 446 | MobiDBLite | consensus disorder prediction | 342 | 372 | - | - | |
Pvu9g1494 | 446 | Pfam | Ring finger domain | 136 | 179 | IPR001841 | - | |
Pvu9g1494 | 446 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 22 | 439 | - | - | |
Pvu9g1494 | 446 | CDD | RING-H2_EL5_like | 136 | 179 | - | - | |
Pvu9g1494 | 446 | MobiDBLite | consensus disorder prediction | 388 | 417 | - | - | |
Pvu9g1494 | 446 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 186 | IPR013083 | - | |
Pvu9g1494 | 446 | SUPERFAMILY | RING/U-box | 131 | 184 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu9g1494 | Pvu-Chr9 | 21128068 | 21130052 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu9g1494 | 56 | 432 | C3H Transcription Factor Family | AT5G05810 | 45.387 | 3.18e-83 | 260 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu9g1494 | K19041 | - | gmx:100794083 | 431.024 |