Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1494 ATGGCTCCTGCACCTTCCTTCACTCTCTCCCTCTTCCTCCTCCTCACTCTCCTCCTGCTCCTTACACACGCAGCACAGTCCAGAGAAACTCCACCTCCAACTCCCCATCGAATCATTGCTCCACCACCGCCCGACAACGACAATGACAACTCGCCGCCGTTCAGACCAGGCATAGCGGTGGTGGTCTGCGTTTTGACCACCATAATCTCCCTCACGTCGCTGCTCCTCCTCTACATCAAACACTGCAACGGCGGCGCCATCCACGGCGGCGGAAGCGGCGGGAGCTCGATTCCGTGGACGGTGTCGCCTTTCGCCGGGAGAAAGAACTCCGGCATTGACCGGTCCGTGGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGAGGACAGAAGGAAGGGCTGGACTGCGCGGTGTGTCTGACGAAGTTCGAGGCGGCGGAGGTTCTGCGGCTGCTGCCGAAGTGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTGGACGCGCATTCAACGTGTCCTCTCTGCCGCTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGGCATTCCGGCAAAGTCAGCAGCAACGGAACAGCCACAACAACAACGAGGAACGCGTGCGATTAAATTTGGACGTGGAGAAGCAGGAGATTGTGGAGTGTGGGCGGAGGCATTCGTCAGTGGGCGAGAGGGGAACAGAGGAGCAGAGTCGGAGGTGGACGTCGTCGTTTAGGAGGTCGTTGGATAGCGCGACATCCAAGAAAAAAAACGAGAGCGTTGGTGTTGTTGGCATTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGCTGTTGACGCAAGAAACGGAGAGGGAGGGAGATAGGACAAGCGTGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGCCCAGGGAAAATGAATGGGGTCCAGCAGCGATGGAGCGACGTGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGTGAATCGCAATGGAACACGCGCCGCGGAGGAAGAGGAAGAGGAAGAGGAAGGGGAAGGAGGAGGAGCCGTACGAATGATGATGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATGGCAATAATAATAACGAGGAGGACAGAGACAGAGACAGAGACAGAGAGTGGGAGCAACAAAGGACAGGGAGAGAGAGAGAAGAGGGACTGGTGAGAAGGTGGTTGGGTTGGATTTCAAACTCACGCACACAACAAACCCAACCAGCTGTACGGTAA 1341 0.5645 MAPAPSFTLSLFLLLTLLLLLTHAAQSRETPPPTPHRIIAPPPPDNDNDNSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGAIHGGGSGGSSIPWTVSPFAGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKAFRQSQQQRNSHNNNEERVRLNLDVEKQEIVECGRRHSSVGERGTEEQSRRWTSSFRRSLDSATSKKKNESVGVVGIGWFVRGRKDGMLLTQETEREGDRTSVERRLEHRIIVSPGPGKMNGVQQRWSDVQASDLLYLTSEMIMSESQWNTRRGGRGRGRGRGRRRSRTNDDEVEDSWSGRGIINSRSVSEITGLSRFSSNGNNNNEEDRDRDRDREWEQQRTGREREEGLVRRWLGWISNSRTQQTQPAVR* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1494 446 SMART ring_2 137 178 IPR001841 -
Pvu9g1494 446 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Pvu9g1494 446 PANTHER RING-H2 FINGER PROTEIN ATL43 22 439 - -
Pvu9g1494 446 MobiDBLite consensus disorder prediction 398 417 - -
Pvu9g1494 446 MobiDBLite consensus disorder prediction 26 51 - -
Pvu9g1494 446 MobiDBLite consensus disorder prediction 34 50 - -
Pvu9g1494 446 MobiDBLite consensus disorder prediction 342 372 - -
Pvu9g1494 446 Pfam Ring finger domain 136 179 IPR001841 -
Pvu9g1494 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 439 - -
Pvu9g1494 446 CDD RING-H2_EL5_like 136 179 - -
Pvu9g1494 446 MobiDBLite consensus disorder prediction 388 417 - -
Pvu9g1494 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 186 IPR013083 -
Pvu9g1494 446 SUPERFAMILY RING/U-box 131 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1494 Pvu-Chr9 21128068 21130052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1494 56 432 C3H Transcription Factor Family AT5G05810 45.387 3.18e-83 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1494 K19041 - gmx:100794083 431.024