Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1478 ATGGCTCTTCATCATCGCTTGTTGCTTGACACAAATTCAAGCACGCCTGCACCAAGTAACGTGAATAGGACAAGAGAGACTTTCACAGGTGATGCAAATTTTGACACCAACATGGTGATTATCTTGGCTGCGTTGCTTTGTGCGCTTATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAGACCCCAGAGGAGACTGCCGCACGTTTGGTAGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTACTGTCGGTATTGCAGCCACAGATTGTCCGATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTAAGATTGTTGCCAAAATGTAACCATGGATTCCATGTAAGACAATCTTTGCTTGAGCAACCGACCATTTCTGGAGCTGTTGCTGCTGGAACCAGTAACTATGCAGGGAATGCTTTAGGAGGACATGAACATGTGTCTTTAGCAGTGGCTGTGGAAGAGGTTCGTTAA 537 0.4581 MALHHRLLLDTNSSTPAPSNVNRTRETFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGTVGIAATDCPICLGEFVDGEKVRLLPKCNHGFHVRQSLLEQPTISGAVAAGTSNYAGNALGGHEHVSLAVAVEEVR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1478 178 PANTHER RING-H2 FINGER PROTEIN ATL74 4 137 - -
Pvu9g1478 178 Pfam RING-like zinc finger 110 136 IPR001841 -
Pvu9g1478 178 SUPERFAMILY RING/U-box 110 136 - -
Pvu9g1478 178 MobiDBLite consensus disorder prediction 1 26 - -
Pvu9g1478 178 MobiDBLite consensus disorder prediction 8 26 - -
Pvu9g1478 178 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 137 - -
Pvu9g1478 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1478 Pvu-Chr9 20916177 20917916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1478 6 137 C3H Transcription Factor Family AT3G10910 57.857 2.43e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1478 - K19040 gmx:100787273 290.041