Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1476 ATGGCCATTGCAGCAACCTCTACCATTCTTCTCTTCTTTGTTCTTAATCTATGCCTCCAAGGCACTTTTGGTGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTCTATGGTGGGGGAGATGCATCAGGCACAATGGGAGGGGCTTGTGGCTATGGCAATTTGTACAGCCAAGGGTATGGTACTAACACTGCAGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGTTGCGGGTCTTGCTATGAGATGAGATGTGACAGTGACCCCAGATGGTGCCTCCCCGGTAGCATAATCGTCACTGCCACAAACTTCTGCCCCCCTAACTTTGCCTTGTCTAATGACAATGGTGGCTGGTGCAACCCTCCTTTGCAACACTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTCTCGTGTGTGAAGAAAGGAGGGATCAGGTTCACCATCAATGGTCACTCATACTTCAACTTGGTTCTGGTCACAAATGTTGGTGGAGCTGGTGATGTTCACTCTGTGTCCATCAAGGGGTCTAGGACTAATTGGCAAACCATGTCTAGAAACTGGGGGCAGAATTGGCAAAGCAACTCTTACCTGAATGGTCAAAGCCTCTCTTTTCAGGTGACTACAAGTGATGGCAGAATTCTGACCAGCAACAACATTGTGCCTGCTAACTGGCAATTTGGTCAAACATTTGAAGGGATACAGTTCTAG 759 0.473 MAIAATSTILLFFVLNLCLQGTFGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDSDPRWCLPGSIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTNWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRILTSNNIVPANWQFGQTFEGIQF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1476 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Pvu9g1476 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Pvu9g1476 252 Gene3D - 159 252 IPR036749 -
Pvu9g1476 252 Gene3D - 20 155 IPR036908 -
Pvu9g1476 252 SUPERFAMILY Barwin-like endoglucanases 12 178 IPR036908 -
Pvu9g1476 252 SMART dpbb_1 65 150 IPR007112 -
Pvu9g1476 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Pvu9g1476 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Pvu9g1476 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Pvu9g1476 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Pvu9g1476 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Pvu9g1476 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Pvu9g1476 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Pvu9g1476 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Pvu9g1476 252 PANTHER EXPANSIN 6 252 - -
Pvu9g1476 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Pvu9g1476 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Pvu9g1476 252 PANTHER EXPANSIN-A15 6 252 IPR002963 GO:0009664
Pvu9g1476 252 Pfam Lytic transglycolase 65 150 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1476 Pvu-Chr9 20892482 20894300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1476 10 252 Expansin Gene Family AT2G40610 81.557 1.23e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1476 K20628 - gmx:547673 497.278