Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1454 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACATATGTTAGGCCCTCCTGGAACCCTAAATACCATCACCCCTTGTGCGGCATGTAAGTTATTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCTCAAAAGTTTGCTTCCGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAGAGAGCTGATGCAGCAAATAGTCTAGTTTATGAGGCCAATGTGAGGCTTAGAGACCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAACAAGTTCAATCCTTACAAGCTGAACTTAGTGTAGTGAGGGCTGAAATACTTAAATACAAACTCAGGGAAGCTCACATGATACCCTCCTCTCATCATGTTGCAATGCTTCCTTCAGCTGGGGCTGTTTCAATCGCTGCTCCACCTCCACCACCTCCTCCACCACCACCACTTCCACCTCCTTCTATTCCTCAAACTTCTTCCTCTTCTTCCATGTACATCCACCAGACTGATCCCACCACTTACACCACAATTTCAAGTGATAATATCTCCTATTTTGGTTAA 660 0.45 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELSVVRAEILKYKLREAHMIPSSHHVAMLPSAGAVSIAAPPPPPPPPPPLPPPSIPQTSSSSSMYIHQTDPTTYTTISSDNISYFG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1454 219 Coils Coil 121 148 - -
Pvu9g1454 219 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Pvu9g1454 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 219 - -
Pvu9g1454 219 MobiDBLite consensus disorder prediction 170 206 - -
Pvu9g1454 219 MobiDBLite consensus disorder prediction 190 206 - -
Pvu9g1454 219 MobiDBLite consensus disorder prediction 170 189 - -
Pvu9g1454 219 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Pvu9g1454 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 26 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1454 Pvu-Chr9 20639950 20641396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1454 27 219 AS2 family AT2G40470 71.939 4.26e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu9g1454 LOB 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1454 - - gmx:100790799 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1454 9 20639950 20641396 Pvu9g1454 9 20639950 20641396 ECH
Pvu1g2591 1 50847592 50853257 Pvu9g1454 9 20639950 20641396 ECH