Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1430 ATGGGATGCGTTTGTGGCAGGTTTTCTCCCCCTCCCCAAGCTGAGAGGCGGAAACAGCCAGTGAAGAGAGTTTTGAGCCGCAAGGGTTCCAGGCCACGCTCCTCTAATGTGGGAGAGAGGGTGAAAAGGGAGACTCAGAGAGTGCGTGTGAGTGTGAATAAGGATTCAGGTGGAGCTGTTGTAGGAGAAGGAGGAGGAGAAAATGTTGCTAAAAAAGAGAAGAATAAGTTATGTGAGGATGCTGATGCTGCTAAAGAAAGTAAGAGTAGTAAAGATTTGGATTTTAAGGAGTCCAAATATGAATCTGTGGAAGGGTGGCCAAAGTGGTTACTGGATAACATCCCCATCAACGTTCTGGCTAAACTTATTCCCAAGAGCGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGGGAGAAGGGGACGGGAAAGATTGTTGCTTTGAAGAAGGTACGGTTTGACACATCGGATTCTGAAAGCATAAAGTTTATGGCAAGAGAGATTATGATGCTGCAGAAGCTTGATCATCCCAATGTCATGAAGCTTAGAGGATTAGCTACATCGAGGATGCAGTATAGTCTTTATCTTGTTTTTGACTTCATGCAGTCTGATCTCACACGCATTATCTCTCGACCCGGGGAGACACTCACCGAACCGCAGATCAAGTGCTATATGCAGCAGCTACTTTGTGGTCTCCAACACTGTCACGAGAGGGGAATTATGCACCGAGATATTAAGGCTTCTAACTTGTTAATAGACAGAAGAGGGGTGCTGAAAATTGCGGATTTTGGACTTGCAACTTCCATTGAATCTGAAAAACCTCTAACAAATAGGGTGGTAACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCAGATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTACTTTAAAAAACTGAAGCTAACAACAAGCTATCGACCTCCACAACATTACAAAGCTTCTTACCAAGAGAACTTCCACAAGTTTCCTTCCTCTACCCAGGCACTCTTGGCTACACTTCTTGATCTCAACCCCACAAATCGTGGAAGTGCTGCCTCTGCCCTTCAAACTCAATTCTTCCTAAGTAGTCCATTAGCATGTGACCCTTCAGCTTTACCAGTAATCCACAAAGACGACGATGAACGCTTACAAACTAAGAAAAGCAAAAGGCACAGGGTTTCTAAAAGAGGGCAACCATCTCAAACGAGTAAAAGTGAAGCAGCTGAATCAGGAAAAAACCAAATTGCTGAACAACCCCGTGAAGATACAGAATCATCGAAAGAGAAGAATGTAGAACAACAGAAGCAGGGTCAAGAAACTGGGTATAGTGCTAGCAGCACATCATCTGGTTCAAGACAATTCACGAATGAAGGGAGCACAAATGCATCTTTATCCCCAGCTTTTCTCTCAAGTGGCAGTGTGAGAAATCCCAAAGCAGAGGGTAACCCAAATGCTCTTAAGAACATAAACCACTACAATGCACTTTTACAGGCCTCTATGATTGACATGATCAACCCCAGTGAAGGTAGCGAAGTTCCTCAGCTTCCAAAATCCTTCTCTCAGTTGGATTTTCGACTTGGTCCAGACAAGCTATCAAACCTCTATAGCTTATCAAATAAACATATTTAA 1779 0.4356 MGCVCGRFSPPPQAERRKQPVKRVLSRKGSRPRSSNVGERVKRETQRVRVSVNKDSGGAVVGEGGGENVAKKEKNKLCEDADAAKESKSSKDLDFKESKYESVEGWPKWLLDNIPINVLAKLIPKSADSYEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDSESIKFMAREIMMLQKLDHPNVMKLRGLATSRMQYSLYLVFDFMQSDLTRIISRPGETLTEPQIKCYMQQLLCGLQHCHERGIMHRDIKASNLLIDRRGVLKIADFGLATSIESEKPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIQMIFKLCGSPSEDYFKKLKLTTSYRPPQHYKASYQENFHKFPSSTQALLATLLDLNPTNRGSAASALQTQFFLSSPLACDPSALPVIHKDDDERLQTKKSKRHRVSKRGQPSQTSKSEAAESGKNQIAEQPREDTESSKEKNVEQQKQGQETGYSASSTSSGSRQFTNEGSTNASLSPAFLSSGSVRNPKAEGNPNALKNINHYNALLQASMIDMINPSEGSEVPQLPKSFSQLDFRLGPDKLSNLYSLSNKHI* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1430 592 ProSiteProfiles Protein kinase domain profile. 130 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1430 592 MobiDBLite consensus disorder prediction 485 528 - -
Pvu9g1430 592 SUPERFAMILY Protein kinase-like (PK-like) 125 415 IPR011009 -
Pvu9g1430 592 MobiDBLite consensus disorder prediction 448 462 - -
Pvu9g1430 592 SMART serkin_6 130 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1430 592 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Pvu9g1430 592 MobiDBLite consensus disorder prediction 465 484 - -
Pvu9g1430 592 Gene3D Transferase(Phosphotransferase) domain 1 213 453 - -
Pvu9g1430 592 Gene3D Phosphorylase Kinase; domain 1 119 212 - -
Pvu9g1430 592 Pfam Protein kinase domain 130 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1430 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Pvu9g1430 592 PANTHER CYCLIN-DEPENDENT KINASE 71 541 - -
Pvu9g1430 592 PANTHER CELL DIVISION PROTEIN KINASE 71 541 - -
Pvu9g1430 592 MobiDBLite consensus disorder prediction 33 50 - -
Pvu9g1430 592 CDD STKc_CDK9_like 130 410 - -
Pvu9g1430 592 MobiDBLite consensus disorder prediction 1 66 - -
Pvu9g1430 592 MobiDBLite consensus disorder prediction 426 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1430 Pvu-Chr9 20320047 20325359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1430 125 527 Core Cell Cycle Gene Families AT5G10270 40.662 1.73e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu9g1430 Pkinase 1.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1430 K08819 - gmx:100782603 863.988