Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1426 ATGATGAACAGTACCGCATTGCCAAGGCTATTTCCGGGCATGAATAGGGAGAGAGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTCGTCACCGGAGAGGTTCCAACAACCACTGATTCTGTCACACCAGACGTGCCTTCTTCTGCTTCTACAACACCCTCTTTACCTTCTTCATCTAATTATATTCTTGCCTCCTCTTCTAGCAAGAGAACTAGGGAACAAGACACACCATGCTTCTCACAAGCCTCTTCTGTACCAAGAAGTGGAGAATGTTCAAACAATTCGAGAAGCAGAATACGAAGGGAAATGGGAAATGCTGTGTATGAATACAAGACAACAGAGAATGTGAGGAGGGATGAGGAGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGATCCGTTCAAGGCGGCGAGGGTGTGGTTAGGGACGTTTGACACGGCGGAGGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGATTTAGAGGAAACAAGGCGAAACTGAACTTCCCTGAGAATGTCACTCTCCGGCAACCTGAGTTTAGTGTTTCCAATTCCGCCACTTCTCTTGCGTCCATTTCAACGTCCAGGGATCAAGTTGTGCATACTCCATCTTTTCTCCCTTCTCAAGCAGCGACCAACGTTTACGAGTATTTTCAGCTCTCGGGCTACCCCACCAACCTTTATAATGACAGGACGCTTGTCACGTCTTCCATGGCTTCTCAACTTCACTCTTCTTCCTCTTCTTCTGCGTTTGTATCGTCTTCGCAGGACACTTCACTTTCTTCCTTTTATTCTAGCCAGATACCACCACCACCTTGGTCTGCTTCTGCTCCTAGCTCTTCTTCCTCAGGATGA 891 0.486 MMNSTALPRLFPGMNREREMSAMVSALTHVVTGEVPTTTDSVTPDVPSSASTTPSLPSSSNYILASSSSKRTREQDTPCFSQASSVPRSGECSNNSRSRIRREMGNAVYEYKTTENVRRDEERRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPEFSVSNSATSLASISTSRDQVVHTPSFLPSQAATNVYEYFQLSGYPTNLYNDRTLVTSSMASQLHSSSSSSAFVSSSQDTSLSSFYSSQIPPPPWSASAPSSSSSG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1426 296 MobiDBLite consensus disorder prediction 272 296 - -
Pvu9g1426 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1 9 294 - -
Pvu9g1426 296 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Pvu9g1426 296 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Pvu9g1426 296 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pvu9g1426 296 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Pvu9g1426 296 MobiDBLite consensus disorder prediction 35 99 - -
Pvu9g1426 296 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Pvu9g1426 296 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Pvu9g1426 296 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Pvu9g1426 296 MobiDBLite consensus disorder prediction 35 94 - -
Pvu9g1426 296 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Pvu9g1426 296 PANTHER DNA-BINDING DOMAIN 9 294 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1426 Pvu-Chr9 20264478 20266250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1426 114 187 AP2-EREBP Transcription Factor Family AT5G61890 77.027 3.83e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu9g1426 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1426 - - pvu:PHAVU_009G137900g 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1426 9 20264478 20266250 Pvu9g1426 9 20264478 20266250 ECH
Pvu2g2755 2 43308758 43309976 Pvu9g1426 9 20264478 20266250 ECH