Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu9g1420 | ATGGGAGACAGCTTATGCGATATTTTCGACGACAAAGAGTTTGGGAGCGACCACTTTGGTGGGGACGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCAATTTCCCTCCCATTAACGAAGAAGCTGTTGCTATCTCGAAAGAGAACGAGGATGTCTCAAGATTGGTGTCCCAAAAGTCTACCTCGTCAAGTGCTCCACAAGATTATTCCGAAACTGAGTTTGAAACCTCACCAAAAACCAAGAGACAGAAGCTTATTCCTACCACGCCAGAGGAATCAAACCCAGATGGACAACAGAGGATGTCTCACATCACCGTCGAACGCAACCGGAGAAAGCAAATGAATGAACACTTGTCCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAACGGGGAGATCAAGCGTCCATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCCAAGAAACAAAGGAAAGTTTACAGCGAAGTCCTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCCTCACCTCTGAGTCCTCGGAAACCACCTCTGAGCCCGAGACTAAACTTGCCCATTAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGCAAGGCTACAACAACATGATTTCACCAACCATGTCCAACTCTCTTGACCCTTCTCCCACTTCTTCTGCTAATTCCTCCATCAACGACAACATCAACGAGCTTGTTGCCAACTCCAAATCCGCCACTGCTGATGTGGAGGTCAAGTTTTCTGGGCCCCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCCGGACAGGCTCTGAAGATAATCACAGCACTTGAAGATCTCGCGCTAGAAATCCTCCATGTCAACATAAACTGTGCTGCTGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCAGAAGAATTGGCTCAACAAATCCAGCAAACATTCTGCTAA | 1017 | 0.4759 | MGDSLCDIFDDKEFGSDHFGGDDLFAILESLESDFTNFPPINEEAVAISKENEDVSRLVSQKSTSSSAPQDYSETEFETSPKTKRQKLIPTTPEESNPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYNNMISPTMSNSLDPSPTSSANSSINDNINELVANSKSATADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC* | 339 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu9g1420 | 338 | Gene3D | - | 93 | 166 | IPR036638 | GO:0046983 | |
Pvu9g1420 | 338 | MobiDBLite | consensus disorder prediction | 210 | 241 | - | - | |
Pvu9g1420 | 338 | MobiDBLite | consensus disorder prediction | 57 | 104 | - | - | |
Pvu9g1420 | 338 | MobiDBLite | consensus disorder prediction | 58 | 76 | - | - | |
Pvu9g1420 | 338 | MobiDBLite | consensus disorder prediction | 174 | 241 | - | - | |
Pvu9g1420 | 338 | SMART | finulus | 107 | 158 | IPR011598 | GO:0046983 | |
Pvu9g1420 | 338 | MobiDBLite | consensus disorder prediction | 180 | 209 | - | - | |
Pvu9g1420 | 338 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 101 | 152 | IPR011598 | GO:0046983 | |
Pvu9g1420 | 338 | PANTHER | - | 1 | 338 | - | - | |
Pvu9g1420 | 338 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 100 | 175 | IPR036638 | GO:0046983 | |
Pvu9g1420 | 338 | CDD | bHLH_AtFAMA_like | 104 | 175 | - | - | |
Pvu9g1420 | 338 | Pfam | Helix-loop-helix DNA-binding domain | 102 | 153 | IPR011598 | GO:0046983 | |
Pvu9g1420 | 338 | Coils | Coil | 145 | 165 | - | - | |
Pvu9g1420 | 338 | MobiDBLite | consensus disorder prediction | 84 | 104 | - | - | |
Pvu9g1420 | 338 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 338 | IPR044283 | GO:0003700|GO:0010052 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu9g1420 | Pvu-Chr9 | 20168679 | 20172056 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu9g1420 | 1 | 318 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G53210 | 52.066 | 1.84e-93 | 280 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pvu9g1420 | HLH | 7.6e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu9g1420 | K20558 | - | gmx:100777437 | 563.918 |