Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1416 ATGGAAGAGAGTATCCTATGCAAACACACAGTGCATCACACCGTCACCAAGAAGCTCCTGTCACCCAAAAAATCCCAAACCAATCCAACCACAGACCGCAGGATAGTCCGGGTATCATACACTGATCCGGATGCCACCGACTCTTCCAGCGACGACGAACCCTTTCCCTTCGTCCGCCAAAGAATCAAGCGCTACGTCAACCAGATTGAGATAGAAACTGCCACCATCGCCGCCCCCAACGTCCTTTCCAATGCTCGCAAGAGGCCCGCCGCCGAGCCATGCCGCCGCCAAGTCAAGCTCCACTCCGGCAAGAAGTTCCGCGGTGTCCGCCAGAGACCGTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGCCAGAAGGGTGCGTCTTTGGTTGGGAACTTACGACACTGCCGAAGAAGCCGCCATGGTCTACGACAATGCCGCTATTAGGCTTCGTGGCCCGGACGCCTTGACAAACTTCGTAACGCCGCCGCTAAAAGAACCTCCGCCGGCTGCGGCGGAGGACGTTTCGGAATTGAAGGTCGGCGTCCCTGAAGAGGCGTCCGGGTCCATGTACGGGTACGACTCTGGCGACGATCACTGCCACCATAACCTTGCCTCTCCAACTTCGGTGCTCCACTTCCGAAGCAACTCGAGCGAAGAGAATTCAGAGAAAACCGAGGAAGTGTTGAGAGAGTGCCAGGGCGAGACAGAAACGAGTTTGTTCGACGAAACGGGGGAGTTTTTAGCGCTGGACAACTTGCCTGCGTGGGATGACGTGTTCAATTTTGAAACCCCGGAGTACCCTCTTGTGTTTGAAGAAGAGCATGTATTAGATGAGTCCCAGATGTTGGGCGAAACCTTAGCGTTTTCCTCGAACGAAGGTTTCAGCGACACTAGTAGTATTTTGCTTGCGGATTCCCTCATAGATTTCGACAAAGCGTGCCCTCCATCCACCTTCTGCCAAGTGGACGATTACTTCCAAGACATTTTGCTGGCTTCTGATCCTCTCGTTCTCCTCTGA 1026 0.5468 MEESILCKHTVHHTVTKKLLSPKKSQTNPTTDRRIVRVSYTDPDATDSSSDDEPFPFVRQRIKRYVNQIEIETATIAAPNVLSNARKRPAAEPCRRQVKLHSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPLKEPPPAAAEDVSELKVGVPEEASGSMYGYDSGDDHCHHNLASPTSVLHFRSNSSEENSEKTEEVLRECQGETETSLFDETGEFLALDNLPAWDDVFNFETPEYPLVFEEEHVLDESQMLGETLAFSSNEGFSDTSSILLADSLIDFDKACPPSTFCQVDDYFQDILLASDPLVLL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1416 341 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Pvu9g1416 341 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Pvu9g1416 341 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Pvu9g1416 341 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Pvu9g1416 341 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Pvu9g1416 341 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Pvu9g1416 341 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Pvu9g1416 341 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 334 - -
Pvu9g1416 341 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 6 334 - -
Pvu9g1416 341 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1416 Pvu-Chr9 20103112 20105454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1416 7 222 AP2-EREBP Transcription Factor Family AT4G27950 48.661 7.69e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu9g1416 AP2 8.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1416 - - gmx:100807598 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1416 9 20103112 20105454 Pvu9g1416 9 20103112 20105454 ECH