Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1375 ATGGATAGCCCTCCTATTCCATCTTACGTCGTGGTTGCATGTGATGCCACAAGGGACCGCACTGAACACGAGATCAAACTCGTTGTTGATCATGTTCGGTCCAGTGGTGTCTTTCTCTCAAATGGTGACAAGCTGCTTGTGCTTTGTGTATTGCACAAAGTCTCTCACCCTATGGGGTACCAGACGTTAGCATGTCCCGAGTCTTTTGCTGGAACCAACTTTCGTACAATGGAGGAAGAAGTCAAAAAGAAAGTTGATACATATGCTAGTGAGCTTTTATCAAGTTATGAAGATTTTCAAAGTGAAGGGGCTACAATTGAAGTTAAAGTCACCGCAGGATTTCCAATTAAACAGGTTGTTTTACAGGAGATTACAAACTACAATGCATCTTGGATAATACTTGACAGACATCTTCGGCGCGACCTGAGATACCACCTTAACAAGTTGCCATGTAAGGTTGCATTGCTTAAAGATGACTTGTCTCTGGAGATTTTGAAATCTCATTATACACAAGACACAAAGGTCACAGCAACAAAATTTGTATTTTCTTTATCAAAGTTTGTGTCGCTATCAGATTGTCATAGCATTGAAGACATTGAGCACTCTATTGTCTCTTACAAAAGCTATCCCCATTCTATAGTTTCTTCTGATACCAGTGGTACGATTAGGAGCTTTACGAAGCATTCAAGTGGTAACAGGTCGCGCGATTACAATTTCGTATCAGAATTTGGATCCTCTTCTAAGCAAGAAAGATCAGACATAAGCACTAAAGGAGAATATAGGTATCTCACTAGTTCTCAGATTGACCAAAAGCAAAACCAAAGTGGCTTTCTGCCAAAACATTCAGATGCACCGCTTCTTTGTACTGGCTGTGGGACAAGAACAGAGTTATCTATCAAAGAGTCAATGAAGTTTAGCTACTCTGACGTACAACTTGCAACAAATGATTTTTCAAAGGATAACTTATTAGGTGAAGGTGGCTATGGTCACGTATACAAGGGCGTGCTTAAAGATGGACAGCAAATTGCGGCAAAGGTAAGGAAAGAAGAAAGTTCACAAGGATTTTCTGAATTTCATTCTGAGGTGTACGTCTTAAGTTTTGCTCGACACAAGAATATAGTGATGCTGTTGGGTTATTGTTGCAAAGAAAAGAAAAACATCCTCATTTATGAATATATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATGATGCAGCAGTTCTTGAGTGGCACCAGAGGTATGCTATTGCCATTGGAATTGCAAAGGGATTGCGTTTTCTACATGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGCGACCAAGCAATATACTTCTCACCCACGATATTGTTCCCATGCTAGGTGACTTTGGGCTTGCTAAATGGAAGACTGGTAATGAAAGTCCTCAAACAATGATAATGGGCACATTAGGATACCTTGCTCCTGAGTATGCTGAGGATGGTATTGTTTCTGAGGGAACAGATGTGTATTCTTATGGCATTATCCTGTTACAATTGATATCGGGACGCCAGGTTGGGAATTCCAACAATCCAGAACAACAACAATCTCTCCGACAATGGGCTGAGCCAATGATAGAGAAGTTGGCCTTACATGAACTGATTGACACTCGTCTAGGGGAATCTTATGACACGTATGAACTCTACCTCATTGCTAAAGCAGCATACTTCTGTGTGCAAAGGAAGCCTGAGATGCGTCCATCAATGGGAGAGGTTGTGCGACTTCTTGAGGGAGAAAGTAGCCACTTCCACTCCTTGGAAGAACAATTTGTACCTAATTTTAACGGCTAA 1821 0.4113 MDSPPIPSYVVVACDATRDRTEHEIKLVVDHVRSSGVFLSNGDKLLVLCVLHKVSHPMGYQTLACPESFAGTNFRTMEEEVKKKVDTYASELLSSYEDFQSEGATIEVKVTAGFPIKQVVLQEITNYNASWIILDRHLRRDLRYHLNKLPCKVALLKDDLSLEILKSHYTQDTKVTATKFVFSLSKFVSLSDCHSIEDIEHSIVSYKSYPHSIVSSDTSGTIRSFTKHSSGNRSRDYNFVSEFGSSSKQERSDISTKGEYRYLTSSQIDQKQNQSGFLPKHSDAPLLCTGCGTRTELSIKESMKFSYSDVQLATNDFSKDNLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKEKKNILIYEYICNKSLHWHLFENDAAVLEWHQRYAIAIGIAKGLRFLHEECRGGPIIHRDMRPSNILLTHDIVPMLGDFGLAKWKTGNESPQTMIMGTLGYLAPEYAEDGIVSEGTDVYSYGIILLQLISGRQVGNSNNPEQQQSLRQWAEPMIEKLALHELIDTRLGESYDTYELYLIAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEEQFVPNFNG* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1375 606 Pfam Protein kinase domain 318 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1375 606 ProSitePatterns Tyrosine protein kinases specific active-site signature. 438 450 IPR008266 GO:0004672|GO:0006468
Pvu9g1375 606 PANTHER OS01G0253100 PROTEIN 8 598 IPR045271 GO:0004714|GO:0006468
Pvu9g1375 606 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Pvu9g1375 606 SUPERFAMILY Protein kinase-like (PK-like) 301 586 IPR011009 -
Pvu9g1375 606 Gene3D Phosphorylase Kinase; domain 1 290 392 - -
Pvu9g1375 606 CDD STKc_IRAK 323 588 - -
Pvu9g1375 606 ProSiteProfiles Protein kinase domain profile. 317 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1375 606 Gene3D Transferase(Phosphotransferase) domain 1 394 600 - -
Pvu9g1375 606 PANTHER RECEPTOR-LIKE KINASE 8 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1375 Pvu-Chr9 19549381 19553385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1375 305 587 Trihelix Transcription Factor Family AT5G38560 44.483 1.28e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Pvu9g1375 Pkinase 2.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1375 - - vun:114163670 1145.18