Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1359 ATGGCTCCAGCACGAGACAATACAATAGTTGTGCTAGTTGCTTGCTTTGTAATGATCTCAGCAGCGTCCCAAACAATTCGCCCTAGCTGCCAACATAAATGTGGAACCGTTAACATTCCGTACCCATTTGGTACAAGGGAGGACTGTTACTTGAACAGCAACTTTTATGTTGCTTGTAACACAAGTCACAAGCCTCCCAAACTATTTCTGTGGAATGTGACAAAAAATATTGAGATCTTAGAGGTGTTATTGAATGGTCATTTGCGGGTAAAATCCCCTGTAGCTTACGTCTGCTATGATGAAAAGGGTGTGCTAGTGGATTCGGGGAATTCATCTATGACTTTACAAGCATTCCCTTTCTCCTACACCCAAAACAAGTTCGTTGGAGTTGGATGCGACACCCTCTCAACCATCAATGCAACAATTGGGAAAAACTACTCTGCTGGAGGGTGTTTTTCAATTTGTAGTAGTGTAGAAAGTTCAACCAGTGGATCCCAGTTTGGCATTGGTTTCTGCCAAACCTCTATCCCAAAAAACATTTTGGAATATCAAGCTCGTGTCATGAAATCAAATATGCTGCATAGGAATATGAATATTCCTTGTAGCTACTCTCTGTTGGTGGAAGAAGACTCTTTCAAGTTTTCCACGGATGACTTCATCAAACTGCAGAAGAGAAGAACAGTTCCCACAGTGCTTGACTGGGCTGTTGGGAATCTAACATGTGAAGAAGCTAAGAATAATTTGACTAGTTATGTTTGCCAAGAAAATAGCGTATGCATTGATTCTCAAAATGGACGCGGGTACCTCTGCGGATGCTTTGAAGGTTACGTGGGAAATGCATACCTTCATGGTGGATGCCATGATATTGACGAGTGTGCTGATCCGAGTCTAAATGACTGTTCAGACATTTGCATTAACCTACCAGGGAGCTATAATTGTTCCTGTCCCAAGGCCAGGAAGTACCTGGGAGATGGCAGAAAAAGAGGAAGTGGCTGTGTCTCGAATCTACAACGTGTGGTTAACGAGATTGTGATAGGTGTTAGAGATCCCACATCGACTAGAGATTAG 1068 0.427 MAPARDNTIVVLVACFVMISAASQTIRPSCQHKCGTVNIPYPFGTREDCYLNSNFYVACNTSHKPPKLFLWNVTKNIEILEVLLNGHLRVKSPVAYVCYDEKGVLVDSGNSSMTLQAFPFSYTQNKFVGVGCDTLSTINATIGKNYSAGGCFSICSSVESSTSGSQFGIGFCQTSIPKNILEYQARVMKSNMLHRNMNIPCSYSLLVEEDSFKFSTDDFIKLQKRRTVPTVLDWAVGNLTCEEAKNNLTSYVCQENSVCIDSQNGRGYLCGCFEGYVGNAYLHGGCHDIDECADPSLNDCSDICINLPGSYNCSCPKARKYLGDGRKRGSGCVSNLQRVVNEIVIGVRDPTSTRD* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1359 355 SMART egf_5 240 287 IPR000742 -
Pvu9g1359 355 SMART egf_5 291 333 IPR000742 -
Pvu9g1359 355 SMART egfca_6 288 333 IPR001881 GO:0005509
Pvu9g1359 355 CDD EGF_CA 288 316 - -
Pvu9g1359 355 SUPERFAMILY EGF/Laminin 288 324 - -
Pvu9g1359 355 Pfam Calcium-binding EGF domain 288 318 IPR001881 GO:0005509
Pvu9g1359 355 Gene3D Laminin 239 290 - -
Pvu9g1359 355 PANTHER OSJNBA0016N04.9 PROTEIN 11 295 - -
Pvu9g1359 355 ProSitePatterns Calcium-binding EGF-like domain signature. 288 313 IPR018097 GO:0005509
Pvu9g1359 355 Pfam Wall-associated receptor kinase galacturonan-binding 30 86 IPR025287 GO:0030247
Pvu9g1359 355 Gene3D Laminin 291 327 - -
Pvu9g1359 355 PANTHER OSJNBA0016N04.9 PROTEIN 11 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1359 Pvu-Chr9 19437341 19440365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1359 9 315 Receptor kinase-like Gene Family AT1G21250 34.277 2.91e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1359 - - pvu:PHAVU_009G131600g 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0685 1 8548562 8550125 Pvu9g1359 9 19437341 19440365 PCT
Pvu9g1359 9 19437341 19440365 Pvu1g0684 1 8512728 8515841 PCT