Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1351 ATGAGAATTGTGTCACTGAAGAGGGGCAACATTTTGAACAGTGAAGCCATGAATGGCGAGGTGGCAATTGCTCATGCAAATGTTGTTGCTGGAGAGGTTAGGGTCTTGAGAAGTGAACCCTTTAGTAATGGGGTGGCAGTTGGAGATAAAGGTGGCTCTGGTGGAGTGGAATGTTTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAAGAGGCAAAATTCAGGAACAATGCAGAGCAGGCATGACAACTGCAAGTCGATTAGCAGATCAGGGTGTGAAGAAACCGTGTGATCTAGCTTTAGGAAATACATCAGATGATTGTTCCCAAGGAAAGTGGGGAAATATTGTACTGCAGCATTTATATCAGTCATTAGGTGATGGCAATGGCGGTGTGGAGGGGTGCATTAGGGAAGCACTTAATCCAAAACATAATCATGCCACTACTGTTATGGATGCCTTTATAATTGAAAAGGATGGTCAAGAATATTGTTATTCACAATCTGAGCGGCTTTCTCATAGAACAGGGAAGGAAGCTAATGGACATGCAGATGACATGTGTAATGGATGTTCCAGTGAATTACCTGACCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCTATAATATCTTAACCTCAGAAAAATTCTGTTTATTGTGTAAGGCTTTACTTGAAAATTTCCCGGGAATGAAGCCTGAAAGTGTATTTGACTTTACCATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCCCCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAACGAGATGGTTGCTCTTGCCAAGAGCCTATCCAGCATGTCAACAACTTCCTACTCTGAGCTGGTAGGAGATTCAGCACCAAGCACATTTCAAGATGGGAAGCAGCCGTCCTGCAACCGAGAATTTGGCTCTCACATGGAACCAGAACAGACGCAAGAATGTGCTATGTGCAAAACCGGAAGTTGCAGCCGTTGTGGAGAGAAGGCAGATGGCAAAGACTGTTTAGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCGGCAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAAGTGTACTGCTAATGGGCTTGGATCTCCACATGAGAATTGTGTATTATGTGAAAGGTTAAATGATGAACAGACTCCAAATGACATAACTGATGATGAAAGCTTTCCTACAATTAAGGAAACAAAAAATGAACTTGAAGAAAATTCAAAGTGCTCCTCTGGTGGGACTAAAGTTTCTGTAGGTGAGAAAACAACACCCATTTGCAAAGTTTGCAGAAATGAAGTGGATGGTAAAAAGATAAAAAAGATAAGAGTATGTGGCCATAGGTTTTGCTCCAACAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAGGCAAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCTCTGTTTGCTTAATTGATCGAGATGATGATCAGATTGTTATCTGTGATGGTTGTGATCGTGGATATCACATCTATTGTTTGACACCTCCACAGGCTTCTATTCCAAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGGGATACAAGCAATTCACAAGGCTAAAAAGGCATATGAATGTAACGAGCCAGGCAGAAAAAGGGATCATGCTGCTGCTAAGCCAAATGCTAAACGTGAAAAGAAACACAGAAATAAACGAGCAAGAGATTTGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATTCCCTGAATTTTGAGGAGAAAGAGGCTGCAATCCAAATTGAGTCGCAGACAACATGA 1860 0.4226 MRIVSLKRGNILNSEAMNGEVAIAHANVVAGEVRVLRSEPFSNGVAVGDKGGSGGVECLRTYKRRKKSSSRGKIQEQCRAGMTTASRLADQGVKKPCDLALGNTSDDCSQGKWGNIVLQHLYQSLGDGNGGVEGCIREALNPKHNHATTVMDAFIIEKDGQEYCYSQSERLSHRTGKEANGHADDMCNGCSSELPDHGVTEMCQRVLYNILTSEKFCLLCKALLENFPGMKPESVFDFTIMNSRMKEQAYEQSPALFLSDIQQVWRKLQDTGNEMVALAKSLSSMSTTSYSELVGDSAPSTFQDGKQPSCNREFGSHMEPEQTQECAMCKTGSCSRCGEKADGKDCLVCDSCEEIYHVSCIEPAVKEIIPHKSWYCAKCTANGLGSPHENCVLCERLNDEQTPNDITDDESFPTIKETKNELEENSKCSSGGTKVSVGEKTTPICKVCRNEVDGKKIKKIRVCGHRFCSNKYYHVRCLTKKQAKSYGHCWYCPSCLCSVCLIDRDDDQIVICDGCDRGYHIYCLTPPQASIPSGKWFCRLCDAGIQAIHKAKKAYECNEPGRKRDHAAAKPNAKREKKHRNKRARDLERGGAMDMLLTAANSLNFEEKEAAIQIESQTT* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1351 619 PANTHER D4, ISOFORM A 115 607 - -
Pvu9g1351 619 Gene3D - 226 383 - -
Pvu9g1351 619 ProSiteProfiles Zinc finger PHD-type profile. 494 544 IPR019787 -
Pvu9g1351 619 SMART PHD_3 444 496 IPR001965 -
Pvu9g1351 619 SMART PHD_3 333 380 IPR001965 -
Pvu9g1351 619 SMART PHD_3 497 542 IPR001965 -
Pvu9g1351 619 Pfam PHD-finger 334 381 IPR019787 -
Pvu9g1351 619 Pfam PHD-finger 497 542 IPR019787 -
Pvu9g1351 619 PANTHER HISTONE ACETYLTRANSFERASE 115 607 - -
Pvu9g1351 619 SUPERFAMILY FYVE/PHD zinc finger 328 382 IPR011011 -
Pvu9g1351 619 ProSiteProfiles Zinc finger RING-type profile. 445 495 IPR001841 -
Pvu9g1351 619 SUPERFAMILY FYVE/PHD zinc finger 496 544 IPR011011 -
Pvu9g1351 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 548 IPR013083 -
Pvu9g1351 619 MobiDBLite consensus disorder prediction 562 590 - -
Pvu9g1351 619 ProSiteProfiles Zinc finger PHD-type profile. 331 382 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1351 Pvu-Chr9 19235530 19242975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1351 496 564 C2H2 Transcription Factor Family AT3G01460 43.478 7.08e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu9g1351 PHD 1.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1351 - - vra:106762438 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1351 9 19235530 19242975 Pvu9g1351 9 19235530 19242975 ECH
Pvu1g0690 1 8595350 8600839 Pvu9g1351 9 19235530 19242975 PCT