Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1343 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCTAGCAACAGGCAAGTTACATATTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGAAAGATGCACGAATACATCAGCCCCTCCACCACGTTGATTGACGTCCTAGACAGATACCAAAGAGCCTCTGGGAAGACCCTGTGGGACGCCAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAGGATATTACGTCACTGAATTACAAGGAACTGATGGCTCTAGAGGATGCCCTTGAAAATGGCCTCAATGGCGTCCGTGAGAAAAAGGTGGAAGTGCACAGGATGTTCAAGAGAAATGGCAAAATTTTGGAGGAGCAAAATAAGGAACTCAATTTTCTTCTGCAACAACATTTGGCACTAGAAGGTGTGGGAAACATGCATGGACAATGGATTTGA 546 0.4377 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGVREKKVEVHRMFKRNGKILEEQNKELNFLLQQHLALEGVGNMHGQWI* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1343 181 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu9g1343 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu9g1343 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu9g1343 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu9g1343 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu9g1343 181 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 175 - -
Pvu9g1343 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 175 - -
Pvu9g1343 181 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pvu9g1343 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu9g1343 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pvu9g1343 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu9g1343 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu9g1343 181 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Pvu9g1343 181 Coils Coil 77 111 - -
Pvu9g1343 181 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1343 Pvu-Chr9 19152385 19155618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1343 1 143 MADS-box Gene Family AT5G20240 69.930 8.50e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu9g1343 K-box 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1343 K09264 - gmx:100795861 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1343 9 19152385 19155618 Pvu9g1343 9 19152385 19155618 ECH
Pvu1g0703 1 8890572 8893027 Pvu9g1343 9 19152385 19155618 PCT