Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1315 ATGGACGATAAAGTGGAGACGCTTGGGAGATTAGCCCGGTGGAAAATTGACAACCTCGGACCTTCTTCCTACAAAAAATCTGACCCTTTCAAGGTCGGAATCTGGAACTGGTACTTTTCAGTTGTGAGGAATAGGTACCTCTACATACATATTTTTCCGGAACCTTCTTCGGTTTCTAAGGATCAACCACCTTTTGCTCGATTCATTCTTCGAGTCTCCAATGCTAGCTCATCTCGCAGCTTTCATATTTCCCCTGTTCAAGAAAAGCTTCTCAGGACAGAGGATGACTTTATCTGGTCTGTGGATACTCCTTCCGTTGGTCGCTACATCATTGATGTTGAGTTTCTAGACCTGAAGATAAATGGTGAAGAAACTAGCTCTGTATGGCCATCTGGAAGTGTACAAACCATTGAATCCCAAAGTAGCACTATTTGTTGCCTCTCTCGCATGCTTGATGAAGCTATACATGCTGACCTAACCATCATCACTGCTGATGGCTCATTGAGAGCTCATAAGGCAGTTCTCTCATCAAGTTCTCCAGTGTTTAGGAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCTTCTACAATCCATGTAGAAGACATGTCACTTGAATCCTGCACGGCTCTTATAAGTTTCTTGTATGGAACAATCAAGCAACAAGATTTCTGGAAACACCGGCTTGCATTGCTTGGAGCTGCTAATAAATATGACATTGATAGTCTCAAAGACATCTGTGAGGAGAGCCTTCTGGAAGATCTTAACTCAAGAAATGTTCTTGATATGCTAAATGAGGCTTGGTTTTATGAATTGCTCAAGTTAAAGAAAGGATGCTTGGTGTTCTTATTTGAATTTGGTAAGATACATGATGTGAGGGATAAACTGAATAATTTTTTCCAACATGCAGATAGGGAGCTAGTGATTGAGATGTTTCAGGAGGTGCTTTCAGTTTCTAACCCTGTATAA 969 0.4118 MDDKVETLGRLARWKIDNLGPSSYKKSDPFKVGIWNWYFSVVRNRYLYIHIFPEPSSVSKDQPPFARFILRVSNASSSRSFHISPVQEKLLRTEDDFIWSVDTPSVGRYIIDVEFLDLKINGEETSSVWPSGSVQTIESQSSTICCLSRMLDEAIHADLTIITADGSLRAHKAVLSSSSPVFRSMFHHNLKEKESSTIHVEDMSLESCTALISFLYGTIKQQDFWKHRLALLGAANKYDIDSLKDICEESLLEDLNSRNVLDMLNEAWFYELLKLKKGCLVFLFEFGKIHDVRDKLNNFFQHADRELVIEMFQEVLSVSNPV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1315 322 Pfam BTB/POZ domain 150 253 IPR000210 GO:0005515
Pvu9g1315 322 Gene3D Potassium Channel Kv1.1; Chain A 132 284 IPR011333 -
Pvu9g1315 322 SUPERFAMILY POZ domain 141 253 IPR011333 -
Pvu9g1315 322 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 1 322 - -
Pvu9g1315 322 SMART BTB_4 157 255 IPR000210 GO:0005515
Pvu9g1315 322 ProSiteProfiles BTB domain profile. 157 216 IPR000210 GO:0005515
Pvu9g1315 322 PANTHER OS08G0495500 PROTEIN-RELATED 1 322 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1315 Pvu-Chr9 18873522 18876481 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu9g1315 BTB 1.9e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1315 K10523 - gmx:100787262 545.043