Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu9g1298 | ATGACGACCCATCCCATGGAAATCGACAGCGACGGCGATGACCACACACACTCCGCCGGCGAATGTGTCATAGGTTCCGAAGACCTTCCCGCTTTCGACAAGGCCATTCCGTGGGTTGAAAAATACCGCCCTCAGTCCCTCGACGACGTGGCCGCTCACCGTGACATTGTTGATACCATTGATAAGCTGACCACAGAGAACCGATTGCCGCATCTTTTATTGTATGGCCCTCCTGGAACGGGCAAAACATCAACCATTCTCGCTGTGGCACGCAAACTATATGGTTCACGCTTCCGCAATATGATTTTGGAACTCAATGCATCAGATGACAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTTAAGTACTCTGTAAAACTGGTATTGTTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATCGAGAAATATACAAAAAGCACCAGGTTTGCTCTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGGTTTCGGTTTGCCCCTCTTGACGCCGTCCATGTCACTGAAAGAATGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGATGATGGCTTAGTAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTACTCAGCAGATAACAGAAGAAGCTATTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATAGAGCAGATATCTTACTGGCTTCTAAACGAACAATATACAGATAGCTTTAAAAGAATAGAAGAAATGAAGACCAGGAAAGGGTTGGCCCTGGTTGATATTATCAGAGAAGTGATAATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAATTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTCATTGCTTCTTTTACACGTGCTAGATCCGCACTGGTTGCAGCTGCTACATAG | 1080 | 0.437 | MTTHPMEIDSDGDDHTHSAGECVIGSEDLPAFDKAIPWVEKYRPQSLDDVAAHRDIVDTIDKLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSRFRNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKYSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERMKHVIKAEGLDVQDDGLVALVRLSNGDMRKALNILQSTHMATQQITEEAIYLCTGNPLPKDIEQISYWLLNEQYTDSFKRIEEMKTRKGLALVDIIREVIMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu9g1298 | 359 | Pfam | ATPase family associated with various cellular activities (AAA) | 72 | 192 | IPR003959 | GO:0005524|GO:0016887 | |
| Pvu9g1298 | 359 | CDD | AAA | 56 | 194 | - | - | |
| Pvu9g1298 | 359 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 33 | 355 | - | - | |
| Pvu9g1298 | 359 | Pfam | Replication factor C C-terminal domain | 260 | 346 | IPR013748 | - | |
| Pvu9g1298 | 359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 36 | 253 | IPR027417 | - | |
| Pvu9g1298 | 359 | CDD | HLD_clamp_RFC | 195 | 257 | - | - | |
| Pvu9g1298 | 359 | Gene3D | - | 198 | 259 | - | - | |
| Pvu9g1298 | 359 | Gene3D | - | 260 | 357 | - | - | |
| Pvu9g1298 | 359 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
| Pvu9g1298 | 359 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 33 | 355 | - | - | |
| Pvu9g1298 | 359 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Pvu9g1298 | 359 | SMART | AAA_5 | 68 | 198 | IPR003593 | - | |
| Pvu9g1298 | 359 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 260 | 350 | IPR008921 | GO:0003677|GO:0006260 | |
| Pvu9g1298 | 359 | Gene3D | - | 31 | 194 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu9g1298 | Pvu-Chr9 | 18667407 | 18673042 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu9g1298 | 30 | 358 | Core DNA Replication Machinery Family | AT1G77470 | 80.119 | 0.0 | 562 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu9g1298 | K10756 | - | gmx:100782652 | 628.632 |