Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1296 ATGGCCGGAAGTGCATCAAAGGTTGTGTTCTCCCTGTTGGTGACTTTGGCCATTACCATCCCATGCCTGGAGGCTGGCATTGCTGAATTTGATGACTTTCTCAAAGCTCAATCTGAGAAAGCTCACAAAATCGCTCTTGAGTCCTATGTACCAACACCCGAGTTCGTCGCCAGTGAACTGAATTACCACGTCCATCTTTCAATGCTGAACAGCACAAGGAGGGGATTGAAGGCAGGGAACAATGACGCCGGAGCGCCTTGTGACAGCAGCAACCCCATTGACAACTGCTGGAGGTGCAACAAAGACTGGGCCAATGACAGGTACAGGCTAGCCAAATGCGGAAAAGGGTTCGGAAGACGTGCAGTCGGAGGCCTCGGTGGACCCATCTATGTGGTCACTGATAATTCCGATGAGGACATGGTTAACCCCAAAGAAGGAACCCTCCGATATGGTGTCACTCAAAAGGGTCCATTGTGGATCACCTTCGCACGCAGCATGATCATCACTCTTCAACAGGAGCTGTTGATTTCCTCCGACAAGACCATCGATGGTCGTGGCGCCAACGTTCAGATCAGGGATGGTGCTGGCCTCACTATGCAATTCGTGAACAACGTTATCATCCACGGGATTCGCGTGAAGAACATTGTGTCTAAGGAGGGTGGCATGATCAGGGACTCTTACAACCACGTTGGACTGAGAACCAGGAGTGATGGTGATGCCATCTCCGTTTTCGGTGCCTCCAACATCTGGATCGATCATGTTTCCCTCTCTAACTCTGATGACGGACTTATCGATGTCATCCAAGGCTCCACTGCCATCACCATCTCTAACTGCCACATGACCAGACATAACGACGTGATGCTGTTTGGTGCTACTGATACCTATTCTGGAGACAAGATCATGCAGATTACAGTGGCATTCAACCACTTCGGGCAGGGACTGATCCAGAGGATGCCAAGGTGCAGAATGGGATTCTTTCACGTTCTGAACAACGATTACACTCACTGGATGATGTACGCAATAGGAGGAAGCGCAGCACCAACCATTCTGAGCCAGGGAAACCGATTCATTGCCCCGAACAACGACGCTGCAAAGGAGATAACGCACAGGGTCGATGCAGAACCAGAAGTGTGGAAGAACTGGCAGTGGCAATCAGACATGGACCTATTGATGAATGGTGCCACGTTCAACACTTCAGGGTCACCAATAACGACGCAATACAAGAAGGGTCTCCTAATGAAGCCAAGAGACGGCACTCACGTCAGCAGGCTTACACGGCATGCTGGTGCCCTCAACTGCTTTGTTGGGTTGCCTTGCTAG 1320 0.5076 MAGSASKVVFSLLVTLAITIPCLEAGIAEFDDFLKAQSEKAHKIALESYVPTPEFVASELNYHVHLSMLNSTRRGLKAGNNDAGAPCDSSNPIDNCWRCNKDWANDRYRLAKCGKGFGRRAVGGLGGPIYVVTDNSDEDMVNPKEGTLRYGVTQKGPLWITFARSMIITLQQELLISSDKTIDGRGANVQIRDGAGLTMQFVNNVIIHGIRVKNIVSKEGGMIRDSYNHVGLRTRSDGDAISVFGASNIWIDHVSLSNSDDGLIDVIQGSTAITISNCHMTRHNDVMLFGATDTYSGDKIMQITVAFNHFGQGLIQRMPRCRMGFFHVLNNDYTHWMMYAIGGSAAPTILSQGNRFIAPNNDAAKEITHRVDAEPEVWKNWQWQSDMDLLMNGATFNTSGSPITTQYKKGLLMKPRDGTHVSRLTRHAGALNCFVGLPC* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1296 439 SMART amb_all 165 362 IPR002022 -
Pvu9g1296 439 SUPERFAMILY Pectin lyase-like 91 430 IPR011050 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Pvu9g1296 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Pvu9g1296 439 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
Pvu9g1296 439 PANTHER PECTATE LYASE 5 439 - -
Pvu9g1296 439 Pfam Pectate lyase 173 356 IPR002022 -
Pvu9g1296 439 Gene3D - 90 432 IPR012334 -
Pvu9g1296 439 PANTHER PECTATE LYASE 18-RELATED 5 439 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1296 Pvu-Chr9 18605290 18606609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1296 8 439 Polysaccharide Lyase AT1G14420 56.250 1.75e-173 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1296 K01728 - gmx:100785801 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1296 9 18605290 18606609 Pvu9g1296 9 18605290 18606609 ECH