Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1295 ATGGAAGGTGAGGAGGGAAAACAGTGCTCCCACAAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTCGATTTTATTCTAGCATTGAGTATGCAAGAACAACAGAGAGACTTCACAATGCTTTCAACAATTGAAAGTGAAAGTGATGAATATCTAAGTGACTCCTCAATTGATAATGATGATGATGGTGATCCTGACTTCGTAGAGAGCCAAGAGTTTGATACTGACCTTTCGTTCCTTGAAGATGAAGAAAGCAATGATGATGAAGAAGAAATGGAAGTCGAAGAAGATGAGATTGATCCAGACGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAAACGAGAGGATTATCAGCAAATGAAATCTCTTTGTGCCTGAACCCTTATACTTACTATTGTGCTGACAGAAAAATTGGAATCGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGATGGTGAAGCACTGGTGGCACTTCAATGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCAAACATGGCTTCGAACACTTAA 609 0.3875 MEGEEGKQCSHKNPYVELEEVDFDFILALSMQEQQRDFTMLSTIESESDEYLSDSSIDNDDDGDPDFVESQEFDTDLSFLEDEESNDDEEEMEVEEDEIDPDELSYEELMELGEFIGEETRGLSANEISLCLNPYTYYCADRKIGIDRCVICQVEYEDGEALVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNMASNT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1295 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 198 IPR045191 GO:0061630
Pvu9g1295 202 MobiDBLite consensus disorder prediction 51 75 - -
Pvu9g1295 202 SMART ring_2 149 189 IPR001841 -
Pvu9g1295 202 Pfam Ring finger domain 148 189 IPR001841 -
Pvu9g1295 202 SUPERFAMILY RING/U-box 148 196 - -
Pvu9g1295 202 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Pvu9g1295 202 MobiDBLite consensus disorder prediction 43 75 - -
Pvu9g1295 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 202 IPR013083 -
Pvu9g1295 202 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1295 Pvu-Chr9 18604060 18604668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1295 96 193 C3H Transcription Factor Family AT3G63530 52.000 1.15e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1295 K19045 - gmx:100526881 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1295 9 18604060 18604668 Pvu1g0742 1 9600266 9601036 PCT