Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1265 ATGTCGTTGAGTCCTCCGAGAGAGAGATACAATGGGCATGGCCAAAGGCGAGAGAGGCCAACGTTCCAAATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCATCGCAGTGGATAACAACCCCTCAGAGGTCACGTGTCCACGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTGGTGGTCGATTTCACTACCGCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGAACCACCCATCCGCCGCTTCCCGGGTCTCCTCCAATCCCAACCAGAAGAAATTCCCGTGCACCACCGCCGCCGACGCTTCCGTCGACGCCAACCCGAACCTGAACCCGTCCAAGAACCTGCACACCACCGCCCTCGCACGTGGATAGTTTTCCAGCCCATGGACCAACCCAACCCCTTCCTGCCCATTAACAACATTCCTAACGGCCCCGGTCCAGGCCAATTCCCATTCCCGCTCCCGCGCACCGTGGACACGCGCGACTATTTCATGGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAGAACGACAGACAGGGTCCCGCGCCGGCGCCGGAAAGGGCCATCGACGCGATTCCGACGGTGAAAATTGCGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGCGGAGAAGCGAGGGAACTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGCCCAGTGTGCCGCCACGAGGTTTCCGTACCTTCTTCTTCGGAGGAGGATGAGTGTGTTGATGTTAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAATTCGAGGTATAGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGATATTTTGCATCTGACAGTCCGACACTCTCTAGAGCTAATAGGAGGCAACCCTCTTGCTGCATTCTTTAG 1050 0.5552 MSLSPPRERYNGHGQRRERPTFQMYWCFQCNRMVRIAVDNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTADPSPEARLLEALSLMMEPPIRRFPGLLQSQPEEIPVHHRRRRFRRRQPEPEPVQEPAHHRPRTWIVFQPMDQPNPFLPINNIPNGPGPGQFPFPLPRTVDTRDYFMGPGLNELIEQITENDRQGPAPAPERAIDAIPTVKIASAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVSVPSSSEEDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRGYFASDSPTLSRANRRQPSCCIL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1265 349 Pfam Ring finger domain 223 265 IPR001841 -
Pvu9g1265 349 SMART ring_2 224 264 IPR001841 -
Pvu9g1265 349 MobiDBLite consensus disorder prediction 108 130 - -
Pvu9g1265 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 271 IPR013083 -
Pvu9g1265 349 ProSiteProfiles Zinc finger RING-type profile. 224 265 IPR001841 -
Pvu9g1265 349 CDD RING-H2_RNF126_like 223 265 - -
Pvu9g1265 349 SUPERFAMILY RING/U-box 204 271 - -
Pvu9g1265 349 Pfam zinc-ribbon 23 57 IPR039525 GO:0061630
Pvu9g1265 349 PANTHER - 14 278 - -
Pvu9g1265 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1265 Pvu-Chr9 18284961 18287580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1265 196 313 C3H Transcription Factor Family AT1G68180 44.538 7.96e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1265 K11982 - gmx:100787399 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1265 9 18284961 18287580 Pvu9g1265 9 18284961 18287580 ECH