Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1257 ATGGCCGACAGTCGGAGATCCACGGGCAACGTTAAGTGGTTCAACGCGAAGAAGGGTTTCGGATTCATAAGTCCCCAAGACGGCTCCGAAGATCTCTTCGTTCACTTCACTTCCATCCGATCTGACGGCTACCGCTCCTTGTCCGATGGCCAGTCTGTCGAGTTCCTCCTCGATTACGGCGACGACGGCCGCGCCATGGCCGTCGACGTCACCTCTCCCGTTAGATCCAGCCGTCCAGTAGGCATTCGAGGCCGGGGTGGGGGCGGAAGAGGACGCTACGGCGGAGGGGAAGGCCGTGGGGGAGGGATCGGCCGTAGAGGAGGTTACGGCCGTGGTGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCGAGGGATTGTTACCAGAGACAGGGTGGTGGTGGTGGTGCTGGTGGTGATGGTAGGATACAGAGACGCGGTGGAGGCGGAGGTGGTGGAGGGTGTTATAACTGTGGAGAGGAAGGGCACTTTGCGAGGGAATGTCCAAACGTTGGGAAATTAAATGAGTGA 543 0.582 MADSRRSTGNVKWFNAKKGFGFISPQDGSEDLFVHFTSIRSDGYRSLSDGQSVEFLLDYGDDGRAMAVDVTSPVRSSRPVGIRGRGGGGRGRYGGGEGRGGGIGRRGGYGRGGGGPECYNCGRIGHLARDCYQRQGGGGGAGGDGRIQRRGGGGGGGGCYNCGEEGHFARECPNVGKLNE* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1257 180 Gene3D - 1 71 IPR012340 -
Pvu9g1257 180 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Pvu9g1257 180 ProSiteProfiles Zinc finger CCHC-type profile. 118 131 IPR001878 GO:0003676|GO:0008270
Pvu9g1257 180 SUPERFAMILY Retrovirus zinc finger-like domains 106 175 IPR036875 GO:0003676|GO:0008270
Pvu9g1257 180 Pfam Zinc knuckle 117 131 IPR001878 GO:0003676|GO:0008270
Pvu9g1257 180 Pfam Zinc knuckle 158 174 IPR001878 GO:0003676|GO:0008270
Pvu9g1257 180 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Pvu9g1257 180 SMART csp_8 8 73 IPR011129 GO:0003676
Pvu9g1257 180 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 175 - -
Pvu9g1257 180 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Pvu9g1257 180 SMART c2hcfinal6 117 133 IPR001878 GO:0003676|GO:0008270
Pvu9g1257 180 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Pvu9g1257 180 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Pvu9g1257 180 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Pvu9g1257 180 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Pvu9g1257 180 Gene3D - 94 146 - -
Pvu9g1257 180 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Pvu9g1257 180 MobiDBLite consensus disorder prediction 71 100 - -
Pvu9g1257 180 Gene3D - 148 178 - -
Pvu9g1257 180 ProSiteProfiles Zinc finger CCHC-type profile. 159 174 IPR001878 GO:0003676|GO:0008270
Pvu9g1257 180 CDD CSP_CDS 8 71 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1257 Pvu-Chr9 18181490 18182507 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pvu9g1257 CSD 5.7e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1257 - - gmx:100815773 211.846