Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1248 ATGGAGGATTTGCAAAGTGCTCTAAAAGATTGTGGCTTATCAGTTTCCACCGTCCCAGAAAAGGGTCGCTCTCTCTTCGCTACAAGGGATTTCTATCCAGGGGATGTGATCATAGGCCAAGAGCCTTACGTTTGTGTTCCAAACAACTCCCCACTTTCCACCCCCAAAAGGTGTGATGGATGTTTGACGACATCTAATGTCCTTAGAAGATGCTCACGTTGCCACGTTGCATACTATTGCAGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCAAGGCTTGACAAGGACAAGAGAAAATCTGTCACACCATCCATACGGCTGATGGTGAGACTTTATCTGCGGAGGAAGTTGCAAGATGATAAGGTCATCTCAAGTACTGCCATGGACAACTACAACTTAGTGGAGGCATTAGTGGCTCACATGTCTGATATCACAGAAGAGCAGCTGGTGCTTTACGCACAGATGGCGAATCTTGTATATTACATATTACAATGGCCAGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGTAATGCTCATACTATTTGTGACAGTGAGTTAAGACCTGTGGGAACAGGATTGTATCCCGTAATTTCCATTATCAATCATAGTTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCATTGGTACGTGCTGTTGAACATATACCCATAGGTACTGAGGTACTGATAAGTTATATAGAGACTGCTGGAAGCACAATGACTCGACAGAAGGCTCTCAAAGAACAGTACCTATTCACTTGTACATGTCCCCGCTGTTCTAAATTGGGTCAGAATGATGATACACAAGAAAGTGCAATTTTAGAAGGATATAGATGCAAAAGTGATAAATGTGGTGGTTTCTTGCTTCACACAACTGATGGGAAAGGATTTCAATGCCAAGGTTGTCAACTAGTTATGGGCAAGGAGGAGGTAAAGGAAACTATAACTGAAATTGAATTGCTATCTGAAGAAGCAGCTTCTAAGTCTTCTTTCTCTTGCGGTTATCAAGAAGTTATTTCCATATATAAAAAGATTGAGAAACTGCAAACAGAACTATATCATCCTTTCTCAGTTAGTTTGATGCAAACTCGTGAGAAGATTTTGAAGTCATTAATGGAGCTGGAACACTGGACAGAAGCTTTAGCATATTGCAAATTGACCATTCCATTCTATGAAAAAGTGTATCCATCTATTCACCCTCTGCTTGGCTTGCAGTATTATACTTGTGGAAAACTAGAATGGTATTTGGGAGAGATAGAGGAAGGTGTTAAATCACTGACGAAGGCGGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGATCTCTTGATGAAGTTGGAAGAAGCCCGTGCTGAAGCCTCTTACAAATTCTCCTCCGTAGACAGCTAG 1458 0.415 MEDLQSALKDCGLSVSTVPEKGRSLFATRDFYPGDVIIGQEPYVCVPNNSPLSTPKRCDGCLTTSNVLRRCSRCHVAYYCRTACQRSEWKLHRLECEVLSRLDKDKRKSVTPSIRLMVRLYLRRKLQDDKVISSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYYILQWPEINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAVEHIPIGTEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCSKLGQNDDTQESAILEGYRCKSDKCGGFLLHTTDGKGFQCQGCQLVMGKEEVKETITEIELLSEEAASKSSFSCGYQEVISIYKKIEKLQTELYHPFSVSLMQTREKILKSLMELEHWTEALAYCKLTIPFYEKVYPSIHPLLGLQYYTCGKLEWYLGEIEEGVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARAEASYKFSSVDS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1248 485 SMART set_7 11 257 IPR001214 GO:0005515
Pvu9g1248 485 Gene3D Tetratricopeptide repeat domain 405 481 IPR011990 GO:0005515
Pvu9g1248 485 Gene3D - 57 108 - -
Pvu9g1248 485 Gene3D - 109 193 - -
Pvu9g1248 485 SUPERFAMILY SET domain 10 250 IPR046341 -
Pvu9g1248 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 476 - -
Pvu9g1248 485 Gene3D SET domain 24 277 IPR046341 -
Pvu9g1248 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 476 - -
Pvu9g1248 485 ProSitePatterns Zinc finger MYND-type signature. 58 96 IPR002893 -
Pvu9g1248 485 SUPERFAMILY TPR-like 354 450 IPR011990 GO:0005515
Pvu9g1248 485 ProSiteProfiles Zinc finger MYND-type profile. 58 96 IPR002893 -
Pvu9g1248 485 ProSiteProfiles SET domain profile. 11 251 IPR001214 GO:0005515
Pvu9g1248 485 Pfam SET domain 22 250 IPR001214 GO:0005515
Pvu9g1248 485 Pfam MYND finger 58 96 IPR002893 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu9g1248 SET 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1248 K11426 - gmx:100789518 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1248 9 18098669 18105272 Pvu9g1248 9 18098669 18105272 ECH