Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1232 ATGGGAAGGTCCCCTTGTTGTGAGAAAGCACACACGAACAAAGGTGCATGGACCAAAGAAGAAGACGATCGCCTCATAGCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGCTGCGGCAAGAGCTGCCGTCTCCGATGGATCAACTACCTCCGCCCTGACCTCAAACGCGGGAATTTTACAGAAGAAGAGGATGAACTCATCATCAAACTCCACAGCCTCCTTGGGAACAAGTGGTCTCTGATAGCCGGAAGATTGCCGGGGAGAACAGACAATGAGATAAAGAATTACTGGAACACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAACGACTCTCCTCGTCAAAATCAGGTTCAAGAATCCGGCGGCGCAGCCACCATATCTTTTGCTCCCAAACAAGAGGAAAAGGAGAACGTGTTCGTGGAGGTTAAGGATTCGAAAAGTCCCACATCGGAACGGTGCCCTGACTTGAACCTTGAGCTAAGTATAAGTCCTCCCCATCCTGAGCGGGAGGAGGGTGATGATGAAGATGAATTGAAGAGTGTTGGGAGAAGCCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAACAGCAAAGACTGTTCCTGTGCCCTCAATGCCAACACTGCTAATGCCAACGCTTCTGCTGCCACTGGCTTCGATTTCTTGGGCTTGAAAACCAATCCTTTGGACTACAGAACCTTGCAAATGAAATTAAATTAA 780 0.4974 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSPRQNQVQESGGAATISFAPKQEEKENVFVEVKDSKSPTSERCPDLNLELSISPPHPEREEGDDEDELKSVGRSLCFACSLGLQNSKDCSCALNANTANANASAATGFDFLGLKTNPLDYRTLQMKLN* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1232 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu9g1232 259 SMART sant 13 63 IPR001005 -
Pvu9g1232 259 SMART sant 66 114 IPR001005 -
Pvu9g1232 259 MobiDBLite consensus disorder prediction 160 198 - -
Pvu9g1232 259 CDD SANT 69 112 IPR001005 -
Pvu9g1232 259 CDD SANT 16 61 IPR001005 -
Pvu9g1232 259 Gene3D - 14 66 - -
Pvu9g1232 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu9g1232 259 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pvu9g1232 259 MobiDBLite consensus disorder prediction 122 142 - -
Pvu9g1232 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu9g1232 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu9g1232 259 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 227 - -
Pvu9g1232 259 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
Pvu9g1232 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu9g1232 259 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu9g1232 259 Gene3D - 69 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1232 Pvu-Chr9 17794990 17796304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1232 1 257 MYB Transcription Factor Family AT4G38620 59.516 6.50e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu9g1232 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1232 K09422 - tcc:18607558 382.874