Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1219 ATGGAATGCGAATATGAATACGGTGGTGAATCACACCGAGCAGCCTCGTTGAGTAGGTTCCGTCAGAAGAGGAAACGAAGATGCTTTGCTAATAAAATTAGATACAGAACCCGTCAAGAAGCTACTCTCAGGGTACATCGTAGTAAGAGCCAGTTTATTTTGTCCAAAATCCAGGACTCAGCAGGCCAAGATGTCATTCACTCAGAAATTTTGAATTGTGGCATCAGCTCAAAATGCACTCCTATGATGCGGCGAGGGCCATCTGGGCCTGGAACACTTTGCAACGCTTGTGGGCTTTCTTGGGCAAACAGAGGTGTCTTCAACTGTAATAAAGCAGATTAA 342 0.4503 MECEYEYGGESHRAASLSRFRQKRKRRCFANKIRYRTRQEATLRVHRSKSQFILSKIQDSAGQDVIHSEILNCGISSKCTPMMRRGPSGPGTLCNACGLSWANRGVFNCNKAD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1219 113 CDD ZnF_GATA 72 106 IPR000679 GO:0006355|GO:0043565
Pvu9g1219 113 SMART GATA_3 67 113 IPR000679 GO:0006355|GO:0043565
Pvu9g1219 113 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 72 107 - -
Pvu9g1219 113 Gene3D - 71 111 IPR013088 GO:0006355|GO:0008270
Pvu9g1219 113 ProSiteProfiles CCT domain profile. 13 55 IPR010402 GO:0005515
Pvu9g1219 113 PANTHER GATA TRANSCRIPTION FACTOR 25 10 107 - -
Pvu9g1219 113 PANTHER GATA TRANSCRIPTION FACTOR 28 10 107 IPR045280 GO:0006355
Pvu9g1219 113 Pfam GATA zinc finger 72 106 IPR000679 GO:0006355|GO:0043565
Pvu9g1219 113 Pfam CCT motif 13 53 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1219 Pvu-Chr9 17627145 17628477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1219 13 107 Tify Gene Family AT4G24470 60.377 6.61e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu9g1219 CCT 3.4e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1219 - - pvu:PHAVU_009G118600g 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1219 9 17627145 17628477 Pvu9g1219 9 17627145 17628477 ECH