Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu9g1215 | ATGGTGGTTGGAAGAGTTGTTGTTCTGAATCCTCCCTCCAATCTGTTCCACAATCCTTCTTCTGCTGCCACGCTCATACCTCCACACACTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCAATCGCACTCGCCACACTCCCACTACCAACAACGACTCTCCCTTCTCAGCTTTCGGAAGACTCAAGGATCAGAAACCGAAGACTGTGCTTCATAGAAGCAAGGACCGAAGACGCGAAGAAGAAGAAGAAGACGATAACGATGATGATGAGGACTACAATGAGAATCACGCAGCCCCCAGACGCAGACCTTCTCAGTCACGGTCTCGGTCAGGTGGACGAGAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCAAAACCACCACTGACACCAACTTCTTCAGTCTCAAGTCATTTAAAGAAGTTGGGTGCGCTGACTACATCCTTCAATCCCTCCAAAAAATCTTCTTGACGCGCCCTTCCCATGTGCAGGCCATGGCTTTTGCTCCTGTTCTCAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGTACCAATCATTCAGCGTGTTAGACAAGAAGAACTTGAAGGACGTAGTCAATCCTCTTCACAAGCTCCTAGAGTCCTTGTACTCGCACCCACTGCGGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCCTTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAAAGGACTCAACTGGAAAGTTTACAGCAGGGAGTTGATGTCTTAATAGCTACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGACTTTGAAGTGGCTCTTCAACGCCTGATCAGTTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGATTGCGAAATGATTATGGGACCTGGTATGCATCGCATAAGTTCTCGCCTTGAGGAGATTCTAGTAGATTGCAGTGGAGAGGATGAACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACCGCACTTGTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACTATTGTGTTCTGCAACAAGATTGAAACATGCAGAAAAGTTGAAAACTCATTAAAGCGATTTGATAGAAAAGGAAATCGCATGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGCAGAGTTTACACGTTCTCCGTCACAAGGAGTCTCCCAGTTTATGGTTTGCACTGACAGGGCTTCACGGGGAATAGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCGCGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACGGCCAGAGGGGCGAAGGGAGTAGGAAAGGCATTTATTTTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCGGAAGGGTCACCCACTACATGATGTGCCTTCGCCATATTAG | 1659 | 0.4659 | MVVGRVVVLNPPSNLFHNPSSAATLIPPHTRLLSFSASAASSSSSSSAANRTRHTPTTNNDSPFSAFGRLKDQKPKTVLHRSKDRRREEEEEDDNDDDEDYNENHAAPRRRPSQSRSRSGGRERGGWDIIPRFPSQAKTTTDTNFFSLKSFKEVGCADYILQSLQKIFLTRPSHVQAMAFAPVLSGKTCVIADQSGSGKTLAYLVPIIQRVRQEELEGRSQSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEVALQRLISSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDEQEKTPDTAFLNKKTALVQLVEESPVPRTIVFCNKIETCRKVENSLKRFDRKGNRMQVLPFHAAMTQESRLASMAEFTRSPSQGVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSRKGHPLHDVPSPY* | 553 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu9g1215 | 552 | MobiDBLite | consensus disorder prediction | 40 | 66 | - | - | |
Pvu9g1215 | 552 | Pfam | Helicase conserved C-terminal domain | 397 | 513 | IPR001650 | - | |
Pvu9g1215 | 552 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 180 | 361 | IPR014001 | - | |
Pvu9g1215 | 552 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 400 | 552 | IPR001650 | - | |
Pvu9g1215 | 552 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 41 | 550 | - | - | |
Pvu9g1215 | 552 | Gene3D | - | 368 | 546 | IPR027417 | - | |
Pvu9g1215 | 552 | MobiDBLite | consensus disorder prediction | 102 | 125 | - | - | |
Pvu9g1215 | 552 | SMART | ultradead3 | 168 | 376 | IPR014001 | - | |
Pvu9g1215 | 552 | SMART | helicmild6 | 424 | 514 | IPR001650 | - | |
Pvu9g1215 | 552 | CDD | DEADc | 160 | 347 | - | - | |
Pvu9g1215 | 552 | Pfam | DEAD/DEAH box helicase | 174 | 347 | IPR011545 | GO:0003676|GO:0005524 | |
Pvu9g1215 | 552 | Gene3D | - | 128 | 360 | IPR027417 | - | |
Pvu9g1215 | 552 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 183 | 525 | IPR027417 | - | |
Pvu9g1215 | 552 | MobiDBLite | consensus disorder prediction | 73 | 89 | - | - | |
Pvu9g1215 | 552 | CDD | SF2_C_DEAD | 373 | 524 | - | - | |
Pvu9g1215 | 552 | MobiDBLite | consensus disorder prediction | 40 | 134 | - | - | |
Pvu9g1215 | 552 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 41 | 550 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu9g1215 | Pvu-Chr9 | 17601963 | 17606697 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu9g1215 | 148 | 522 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 27.660 | 1.36e-30 | 122 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu9g1215 | K13179 | - | gmx:100784377 | 799.275 |