Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1215 ATGGTGGTTGGAAGAGTTGTTGTTCTGAATCCTCCCTCCAATCTGTTCCACAATCCTTCTTCTGCTGCCACGCTCATACCTCCACACACTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCAATCGCACTCGCCACACTCCCACTACCAACAACGACTCTCCCTTCTCAGCTTTCGGAAGACTCAAGGATCAGAAACCGAAGACTGTGCTTCATAGAAGCAAGGACCGAAGACGCGAAGAAGAAGAAGAAGACGATAACGATGATGATGAGGACTACAATGAGAATCACGCAGCCCCCAGACGCAGACCTTCTCAGTCACGGTCTCGGTCAGGTGGACGAGAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCAAAACCACCACTGACACCAACTTCTTCAGTCTCAAGTCATTTAAAGAAGTTGGGTGCGCTGACTACATCCTTCAATCCCTCCAAAAAATCTTCTTGACGCGCCCTTCCCATGTGCAGGCCATGGCTTTTGCTCCTGTTCTCAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGTACCAATCATTCAGCGTGTTAGACAAGAAGAACTTGAAGGACGTAGTCAATCCTCTTCACAAGCTCCTAGAGTCCTTGTACTCGCACCCACTGCGGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCCTTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAAAGGACTCAACTGGAAAGTTTACAGCAGGGAGTTGATGTCTTAATAGCTACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGACTTTGAAGTGGCTCTTCAACGCCTGATCAGTTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGATTGCGAAATGATTATGGGACCTGGTATGCATCGCATAAGTTCTCGCCTTGAGGAGATTCTAGTAGATTGCAGTGGAGAGGATGAACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACCGCACTTGTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACTATTGTGTTCTGCAACAAGATTGAAACATGCAGAAAAGTTGAAAACTCATTAAAGCGATTTGATAGAAAAGGAAATCGCATGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGCAGAGTTTACACGTTCTCCGTCACAAGGAGTCTCCCAGTTTATGGTTTGCACTGACAGGGCTTCACGGGGAATAGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCGCGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACGGCCAGAGGGGCGAAGGGAGTAGGAAAGGCATTTATTTTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCGGAAGGGTCACCCACTACATGATGTGCCTTCGCCATATTAG 1659 0.4659 MVVGRVVVLNPPSNLFHNPSSAATLIPPHTRLLSFSASAASSSSSSSAANRTRHTPTTNNDSPFSAFGRLKDQKPKTVLHRSKDRRREEEEEDDNDDDEDYNENHAAPRRRPSQSRSRSGGRERGGWDIIPRFPSQAKTTTDTNFFSLKSFKEVGCADYILQSLQKIFLTRPSHVQAMAFAPVLSGKTCVIADQSGSGKTLAYLVPIIQRVRQEELEGRSQSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEVALQRLISSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDEQEKTPDTAFLNKKTALVQLVEESPVPRTIVFCNKIETCRKVENSLKRFDRKGNRMQVLPFHAAMTQESRLASMAEFTRSPSQGVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSRKGHPLHDVPSPY* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1215 552 MobiDBLite consensus disorder prediction 40 66 - -
Pvu9g1215 552 Pfam Helicase conserved C-terminal domain 397 513 IPR001650 -
Pvu9g1215 552 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 361 IPR014001 -
Pvu9g1215 552 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 552 IPR001650 -
Pvu9g1215 552 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 41 550 - -
Pvu9g1215 552 Gene3D - 368 546 IPR027417 -
Pvu9g1215 552 MobiDBLite consensus disorder prediction 102 125 - -
Pvu9g1215 552 SMART ultradead3 168 376 IPR014001 -
Pvu9g1215 552 SMART helicmild6 424 514 IPR001650 -
Pvu9g1215 552 CDD DEADc 160 347 - -
Pvu9g1215 552 Pfam DEAD/DEAH box helicase 174 347 IPR011545 GO:0003676|GO:0005524
Pvu9g1215 552 Gene3D - 128 360 IPR027417 -
Pvu9g1215 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 525 IPR027417 -
Pvu9g1215 552 MobiDBLite consensus disorder prediction 73 89 - -
Pvu9g1215 552 CDD SF2_C_DEAD 373 524 - -
Pvu9g1215 552 MobiDBLite consensus disorder prediction 40 134 - -
Pvu9g1215 552 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 41 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1215 Pvu-Chr9 17601963 17606697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1215 148 522 Eukaryotic Initiation Factors Gene Family AT3G19760 27.660 1.36e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1215 K13179 - gmx:100784377 799.275