Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1203 ATGACGGAAAATACTACACCTCAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGTCGGGACTCAAATTTCAAGCTAGAGCCAACTAATATGCAGGCTAGTGCAAACTACCCTTCAGCCATAAGCTCTGCTGCACATTTATCATCAGCTGAGGAACAGCCAGCTGGTTTTCGGGTAAATCATGAAATTGAAGTGGTTAAAAATCCTACTACACCTTCAGTCTTGTTTGATGGAGTAGCCAAGGATAGCACCCACAAAAACTTAGGTATTAGCAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAGATATGGAAACTGAAATGGATGGAAATGGTGAATGCTCCTCCTCCAGTGTAATAGTCATGGATTCCACTAGGGAAGAAGTGACGGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTAGAGAATATTCTCCTGAAGATAATGTGGCTTCTGGGGAAGATGCTGCCATCACTGGTAATAGCTGCTGTTCCAGGTCGTGCAAAATATGTGATCGTTTAGACAGTTCACTTAACATGCTTTTATGTGATCACTGTGAAGATGCATATCATCCGTCTTGCTACAATCCACGGTCGAAAAAATTGCCAATTGATGAGTGGTTTTGTCATTCATGTCTGAAGAAAAGGCAGAAAAATCTCAAGGAACCAAGTATCCACAATGAATTGGGCAAATGTAGAGCTACCTCAGTTAAGGGTGAAGCAAATCCCATACTTTTGATGTTGAGAGACACTGCGCCACATACAACTGCTGTGCGGGTTGGTAAAGGATTTCAAGCAGAAGTTCTTGACTGGTCAGGTCCGATAAAAAGTGAGGAAGATGCCCTTCCTGAACCATTCGAAATTAATCCTTCGGACTTCAATCGGCTACTGGAAGAGAACACACGAAGTCCTACTAAACTTAGTGCCATTGGTAATTGGATTCAATGCCAGGCAGTTATAGACAGAGCCAATGGAACTATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTGATGTCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGCACCTCAGGAGCTTGAAACAGAACAAGTATTGAAGCAACTGAAGTATGTGGAAGTGCTACGGCCACGAGTTGCTGCTAAACGGAAAAAATCAGATTGCACACAAAATAAGGATTGA 1209 0.4235 MTENTTPQPKMVYRRKKLRRDSNFKLEPTNMQASANYPSAISSAAHLSSAEEQPAGFRVNHEIEVVKNPTTPSVLFDGVAKDSTHKNLGISSVNDSCSSSKPDMETEMDGNGECSSSSVIVMDSTREEVTEKDFCINTLRTHGLLREYSPEDNVASGEDAAITGNSCCSRSCKICDRLDSSLNMLLCDHCEDAYHPSCYNPRSKKLPIDEWFCHSCLKKRQKNLKEPSIHNELGKCRATSVKGEANPILLMLRDTAPHTTAVRVGKGFQAEVLDWSGPIKSEEDALPEPFEINPSDFNRLLEENTRSPTKLSAIGNWIQCQAVIDRANGTICGKWRRAPFFEVQTDVWECFCAIHWDPSHADCAAPQELETEQVLKQLKYVEVLRPRVAAKRKKSDCTQNKD* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1203 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 230 IPR013083 -
Pvu9g1203 402 ProSiteProfiles Zinc finger PHD-type profile. 169 219 IPR019787 -
Pvu9g1203 402 ProSitePatterns Zinc finger PHD-type signature. 172 216 IPR019786 -
Pvu9g1203 402 MobiDBLite consensus disorder prediction 93 116 - -
Pvu9g1203 402 PANTHER ZINC FINGER SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 60 393 - -
Pvu9g1203 402 SUPERFAMILY FYVE/PHD zinc finger 163 221 IPR011011 -
Pvu9g1203 402 SMART PHD_3 171 217 IPR001965 -
Pvu9g1203 402 Pfam PHD-finger 172 218 IPR019787 -
Pvu9g1203 402 Gene3D - 315 380 - -
Pvu9g1203 402 ProSiteProfiles Zinc finger CW-type profile. 311 371 IPR011124 GO:0008270
Pvu9g1203 402 PANTHER HISTONE ACETYLTRANSFERASE 60 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1203 Pvu-Chr9 17513492 17525935 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu9g1203 PHD 7.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1203 - - pvu:PHAVU_009G117100g 828.55