Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1189 ATGGAATATGGAGCCTTGGTGCAGAATGGTGCGTGTGGGAGCTTCTCAGATATTTTTGCCCCAGAAACGGACTTTATGGATGAGCTGTTTGCAGAAGGATGCTGGGTGGAAACAAGGGTTGGATGTGGAGGATCGTACCTTAATTGTGGGACGGAGCCTTCCAAGTCAAACAGCTGCATGGAAATAATATTTGAGGAAGAATCAGAGGCGGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCTAGGGCGAATAATCCAGGGCCATCTTCCTCTGTGAAGGAGAGATTAGTGGTTGCGGTTGGGTACTTGAAAGAATACGCCAAGAACTCCAATATGGTGATTCAGGTATGGGTGCCCGCACGGAGAGGATGTGCAGTAGGGATTCATCAGGACTCATACACCACCCTTGACTATACTAATATTACTAATAACAACAATGGGGATGCAACAAGAGTCTTTCAGTTTCAGGAGGAGTGGCTTTCTGATCACTGGACTCCCAACATTCGCTTCCTCAGAACTCACGACTACTCCCGCGTTCAGCAGTACGATCTACGTGCTGGATCTCTGTCCCTTCCCGTCTTTCAGAGAGGCAGTGGAATTTGTCTCGGTGTTGTCGAGATTCTCCTGCCCAACAACGTCAACCCGGACCTTCACAACCTTCAGGGTGTTGATTTTAGGAGCTATTCTCTTCAGAACTTCATTCCACCAGCCATGACTGTGAAGGGTTTTGACGAGTTATACCAAGGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTGTGCAAGGCGCATGAGTTGCCTTTGGCTTTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGCGGGCATTCAAACGAAGAGAATTATGTGTCAACAGTGGATCCAGCAAGCTTTGTGGCAGATGTAGATGTGTTGGGATTCCTGGACGCGTGCTCTGAGTACCACCTTTTGGGGGGACAAGGAGTGGTTGGAACAGCTTTCACAACCGCCAAGCCTTGCTTTGCAAATGACATAACTGCCTTCACCAAGGCTGAATATCCTCTTGCACATTATGCGAACATGTTCGGCTTGCATGCTGCCGTGGCCATTCCTCTCCGGAGTGTCTCCGCTGATTTTGTCTTGGAGTTTTTCCTGCCAAAGGATTGCCACGACACCCAAGACCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTGCAGCAAGCTTGCCGGAGTTTGCACGTTGTAATGGACAAGGAGGAGGAGGAGGAATTGGTGGTACACCATCATCATCATCCTCATGATAGCAAAGAAATGGAATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTTTCAGTCTCTCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACAAACTGCAGTGAACAGGTATTCTCGGAATTGGAAGGAACAGGCAGTGTTGGTGTTGGTGTTGGTGGACGCAGGGGTGGCAGGAAATCAGGCGACAAGAGACGAACCAAGGCAGAGAAGACCATAAGCTTGCCGGTTCTTAGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGTATGTCCCACCACTCTAAAAAGAATATGCAGACAACATGGGATTACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCCTTAAGGAAACTTCAACTTGTGATCGACTCCGTCCAGGGTGCCGAAGGTTCCATTCAAATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGAGCTCTGCCAATGGTGTTTCAGAATCAACCAAGATCAACAACGATAATTCTAAGTTTTATTCTGAAAATGGGTTGCTTAGTAACCAAGGAGTTACCACCACTACTTCCACTTCTCCTTTCAAATCCCCAACCTCGTCTTGCAGTCAGACTTGTAACCCAACTTCAAACCAATCAACCGCTATCATCAACAACAATAACAACAACGATGACATTATTCTGATGTCAGAGAACCAATCACTAATTGGCGCACCAATCCAAGTCCAAGGGGAAGCAAGGCATTTCACCCATCATCCTCCCATTCCCATTTCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCCCTGCCCCAAACTAACAGTGTCTGGAACACGGGCAGTGGTAGCTTTAGGGTGAAAGCTACTTTTGGAGATGAAAAAATCCGTTTCAGCTTGCAACCAAATTGGGGATTCAGAGATTTGCAGATGGAGATTGCAAGACGTTTCAATCTGAACGAGATTAGCAACAGTCAGCTAAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTGACATGCGATGCAGATCTTGAGGAGTGTAAAGACATTAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTAAGTCATTCAACAAATGCATTTGGCGGCACCAGCCCCACTTAA 2469 0.4694 MEYGALVQNGACGSFSDIFAPETDFMDELFAEGCWVETRVGCGGSYLNCGTEPSKSNSCMEIIFEEESEAESLMVGKRWWIGPRANNPGPSSSVKERLVVAVGYLKEYAKNSNMVIQVWVPARRGCAVGIHQDSYTTLDYTNITNNNNGDATRVFQFQEEWLSDHWTPNIRFLRTHDYSRVQQYDLRAGSLSLPVFQRGSGICLGVVEILLPNNVNPDLHNLQGVDFRSYSLQNFIPPAMTVKGFDELYQGALNEIVEVLTCVCKAHELPLALTWAPCIQQGKSGCGHSNEENYVSTVDPASFVADVDVLGFLDACSEYHLLGGQGVVGTAFTTAKPCFANDITAFTKAEYPLAHYANMFGLHAAVAIPLRSVSADFVLEFFLPKDCHDTQDQKQMLNSLSMLVQQACRSLHVVMDKEEEEELVVHHHHHPHDSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCSEQVFSELEGTGSVGVGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGSIQIGSFYTSFPELSSANGVSESTKINNDNSKFYSENGLLSNQGVTTTTSTSPFKSPTSSCSQTCNPTSNQSTAIINNNNNNDDIILMSENQSLIGAPIQVQGEARHFTHHPPIPISIPIQSLDALPPLPQTNSVWNTGSGSFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNSQLKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLSHSTNAFGGTSPT* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1189 822 ProSiteProfiles RWP-RK domain profile. 501 582 IPR003035 -
Pvu9g1189 822 PANTHER PROTEIN NLP2 26 814 - -
Pvu9g1189 822 MobiDBLite consensus disorder prediction 491 511 - -
Pvu9g1189 822 ProSiteProfiles PB1 domain profile. 723 806 IPR000270 GO:0005515
Pvu9g1189 822 SMART PB1_new 723 806 IPR000270 GO:0005515
Pvu9g1189 822 Pfam RWP-RK domain 515 562 IPR003035 -
Pvu9g1189 822 Gene3D - 724 806 - -
Pvu9g1189 822 CDD PB1_NLP 724 805 IPR034891 -
Pvu9g1189 822 PANTHER PROTEIN NLP8 26 814 IPR045012 GO:0003700
Pvu9g1189 822 MobiDBLite consensus disorder prediction 627 647 - -
Pvu9g1189 822 Pfam PB1 domain 724 805 IPR000270 GO:0005515
Pvu9g1189 822 SUPERFAMILY CAD & PB1 domains 714 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1189 Pvu-Chr9 17341245 17344727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1189 56 807 NLP Transcription Factor Family AT4G35270 44.118 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pvu9g1189 PB1 5.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1189 - - pvu:PHAVU_009G115800g 1577.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1189 9 17341245 17344727 Pvu9g1189 9 17341245 17344727 ECH