Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1143 ATGATGTGGCTCAATAGGCTCAATAGACACAATATTAGTACTCTGCCACCACACACAAAAAAGTTGTTGGCAGTGATCATGTCGAGCATTTCCTTGAAGGAGAACGGTGGTGAGGTTTCTGTGAAGAAGGATTATAGCAATGGTGGGGGTGTGAGGGACTTGTATGGCGAGGACAGTGCCACAGAGGATCATCTTATCACTCCATGGACCTTCTCTGTAGCCAGTGGATGCAGTTTGCTGAGAGATCCACGTTACAACAAAGGGCTGGCCTTTACTGAGGGAGAGAGAGATGCTCATTACTTGCGTGGCCTTTTGCCCCCATCTGTCTTCAATCAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCTTGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTCTACAAGCTTCTGATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACGGTTGGAGAAGCATGCCAGAAATACGGAAGCATTTTTAGGCGTCCTCAGGGTCTTTATATCAGTTTGAAAGAAAAAGGCAAGATCCTTGAAGTACTGAAAAACTGGCCAGAAAAGAGTATTCAAGTTATTGTTGTGACCGATGGTGAGCGTATATTAGGACTGGGAGATCTTGGCTGCCAGGGAATGGGAATTCCGGTTGGGAAACTTTCTCTCTATACTGCTTTAGGAGGTGTTCGCCCTTCGTCTTGCTTGCCTGTTACCATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTTTACATTGGGCTTAGACAAAGGCGTGCAACTGGGCAGGAATATGCGGAGCTTCTAGACGAGTTTATGCGTGCAGTTAAGCAGAACTATGGAGAGAAAGTTCTCGTACAGTTTGAGGATTTCGCCAATCATAATGCATTTGATCTGCTGGAAAAATACAGCTCATCTCATCTTGTTTTCAACGATGATATCCAGGGTACAGCGTCTGTTGTATTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCACACCTTCTTATTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATTGCTCTTGAGGTCTCAAAGCAGACAAAAGCTCCAGTGGAAGAGACCCGCAAGAAGATATGGCTTGTGGATTCAAAGGGACTTATTGTCAGCTCTCGTCTGGAATCACTTCAGCAATTCAAAAAGCCTTGGGCTCATGAGCATGAACCTGTGAAGGGACTTCTAGAGGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGCAGGGAAGACATTTACCAAGGAAGTGGTTGAAACCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAGGCTTACACATGGAGCAAGGGTAGAGCAATCTTTGCTAGTGGAAGCCCATTTGACCCTGTTGAATATGAAGGAAAACTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCCGGTTTTGGCTTGGGTTTGATCATGTCTGGTGCAATCCGTGTGCGTGATGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCACAAGTGTCAGAGGAGAACTATGATAAGGGACTGATTTATCCTCCATTCACAAACATCAGGAAGATATCAGCCAACATTGCTGCTAAAGTGGCGGCTAAGGCATATGATCTAGGTCTGGCTTCTCATCTGCCAAGGCCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTACCGAAGCTACCGTTGA 1848 0.4594 MMWLNRLNRHNISTLPPHTKKLLAVIMSSISLKENGGEVSVKKDYSNGGGVRDLYGEDSATEDHLITPWTFSVASGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPSVFNQELQEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYAELLDEFMRAVKQNYGEKVLVQFEDFANHNAFDLLEKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEVSKQTKAPVEETRKKIWLVDSKGLIVSSRLESLQQFKKPWAHEHEPVKGLLEAVKAIKPTVLIGSSGAGKTFTKEVVETMASLNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLIMSGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFTNIRKISANIAAKVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1143 615 PANTHER MALIC ENZYME 34 615 - -
Pvu9g1143 615 PANTHER MALIC ENZYME-RELATED 34 615 - -
Pvu9g1143 615 Gene3D - 74 328 IPR037062 GO:0004471
Pvu9g1143 615 SMART malic_2 140 321 IPR012301 GO:0004471
Pvu9g1143 615 Gene3D - 329 615 - -
Pvu9g1143 615 SMART Malic_M_2 331 584 IPR012302 GO:0051287
Pvu9g1143 615 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 56 330 IPR046346 -
Pvu9g1143 615 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 331 614 IPR036291 -
Pvu9g1143 615 Pfam Malic enzyme, NAD binding domain 331 583 IPR012302 GO:0051287
Pvu9g1143 615 PIRSF ME 38 615 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 CDD NAD_bind_1_malic_enz 331 609 - -
Pvu9g1143 615 ProSitePatterns Malic enzymes signature. 327 343 IPR015884 GO:0004471
Pvu9g1143 615 PRINTS Malic enzyme signature 146 170 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 PRINTS Malic enzyme signature 206 235 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 PRINTS Malic enzyme signature 242 264 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 PRINTS Malic enzyme signature 302 320 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 PRINTS Malic enzyme signature 327 343 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 PRINTS Malic enzyme signature 358 374 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 PRINTS Malic enzyme signature 461 477 IPR001891 GO:0004470|GO:0004471
Pvu9g1143 615 Pfam Malic enzyme, N-terminal domain 140 320 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1143 Pvu-Chr9 16740222 16745122 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1143 K00029 - gmx:100801564 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1143 9 16740222 16745122 Pvu9g1143 9 16740222 16745122 ECH
Pvu9g1143 9 16740222 16745122 Pvu10g1512 10 41665877 41671047 ECH
Pvu9g1143 9 16740222 16745122 Pvu5g1717 5 39126159 39131844 ECH
Pvu2g3184 2 47120072 47126513 Pvu9g1143 9 16740222 16745122 ECH
Pvu10g1512 10 41665877 41671047 Pvu9g1143 9 16740222 16745122 ECH
Pvu5g1717 5 39126159 39131844 Pvu9g1143 9 16740222 16745122 ECH