Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1132 ATGGAAGCACAAGAGTTCTTCCACAATACCTTCTATCCTCAATTCCCCTCCGACAACACACCTCCCTCTAACGCCAGCGCCGCCGTCACTGACCACTTCACTGTTGAAGACTTCTTCGACTTCTCCAACAACGACGACCCTCCCCTCGCCGAGGCCACCACCTTCGACTCTCTCCCCACTGACCACTCTCCCACCTTAACCAACATCGACACTTCCACCAACAACTCCAATTTCACAGTCACCGACGGACATTTCTCCGGTGACCTCTCTGTCCCGTATGATGATCTTGCGGAATTGGAATGGCTGTCGAAATTCGCGGAGGAATCCTTTTCCAGCGAGGACTTACAGAAGCTGCAGCTGATATCCGGCGCCGGAGTGCAAAAGGATGCCACATCGGAAACACGTGACCCGAACCCGGCTTTATTCAACCCGCAAGTATCGGTTCGGGGCAAGGCGAGGAGTAAGAGGACTAGAGGACCGCCATGCAATTGGACATCTCGTCTGGTCGTCCTTTCTCCGAACACCGTGTCGGAGTCTTTTCATTCAGACGGCGGTAAGAAGGTTGCCCCGCGGAGGAGGGATGTGAGCGAGGGCAGCAGCGAGGGCAGAAAGTGTCTGCATTGCGCGACGGACAAGACGCCGCAGTGGCGGACCGGCCCCATGGGCCCAAAAACACTTTGCAATGCATGCGGCGTGAGGTACAAGTCCGGCAGGCTGGTGCCCGAGTACAGGCCCGCCGCAAGCCCAACTTTTGTGCTGACAAAGCACTCAAACTCGCATCGGAAAGTGTTGGAGCTGCGGCGGCAGAAGGAAATGGTGAGGGTCCAGCAGGAGCAGTTGCTCCACCTGCAGCATCAGCAAAACATGATGTTCGAAGTTCCATCCAACGGTGAGGATTACTTGATCCATCAGCAATGGGTCCCGAATTCACACACCTCATCTAATCTCCTCCTAGACTAG 960 0.5552 MEAQEFFHNTFYPQFPSDNTPPSNASAAVTDHFTVEDFFDFSNNDDPPLAEATTFDSLPTDHSPTLTNIDTSTNNSNFTVTDGHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQKDATSETRDPNPALFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTVSESFHSDGGKKVAPRRRDVSEGSSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQEQLLHLQHQQNMMFEVPSNGEDYLIHQQWVPNSHTSSNLLLD* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1132 319 SMART GATA_3 199 249 IPR000679 GO:0006355|GO:0043565
Pvu9g1132 319 MobiDBLite consensus disorder prediction 128 161 - -
Pvu9g1132 319 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Pvu9g1132 319 PANTHER GATA TRANSCRIPTION FACTOR 1 309 - -
Pvu9g1132 319 PANTHER GATA TRANSCRIPTION FACTOR 1 309 - -
Pvu9g1132 319 MobiDBLite consensus disorder prediction 184 201 - -
Pvu9g1132 319 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Pvu9g1132 319 MobiDBLite consensus disorder prediction 10 26 - -
Pvu9g1132 319 Pfam GATA zinc finger 205 238 IPR000679 GO:0006355|GO:0043565
Pvu9g1132 319 Gene3D - 198 249 IPR013088 GO:0006355|GO:0008270
Pvu9g1132 319 MobiDBLite consensus disorder prediction 1 26 - -
Pvu9g1132 319 PIRSF Txn_fac_GATA_plant 6 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pvu9g1132 319 ProSiteProfiles GATA-type zinc finger domain profile. 199 235 IPR000679 GO:0006355|GO:0043565
Pvu9g1132 319 MobiDBLite consensus disorder prediction 176 201 - -
Pvu9g1132 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1132 Pvu-Chr9 16562049 16563647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1132 2 309 C2C2-Gata Transcription Factor Family AT5G25830 47.977 4.18e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu9g1132 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1132 - - pvu:PHAVU_009G110400g 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1132 9 16562049 16563647 Pvu9g1132 9 16562049 16563647 ECH