Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1117 ATGGTAACATCTCCACTTCAGAAGATGTGTAACACCATCATGTTCAACCCCTTTAAGAACCATTTGCCAATAATGTTCATGATGCTTTTTTCTTTCCCCTTCAATGTTCAATCTCAAGACAAGGAAGACGAAGAACAGAACCTGCCACAAGACCCTCAAACCGTTCATCCAAGCAAGGGGGTTGTGATAGCAGTGCTCTCCACCATGTTTGCCATTACACTTATCTTACTTTTATATGTGAAGTTCTGTAGAGTCAACCCTCATCAACTTCTTACCCGAAACTCAAATCTCCAAAACTCTCAGGGCCTATCTCGATCAAGTTTAAGAGTTTGTGGTATTGACAAAGAAGTAGTTAAAACCCTTCCTTTCTTCACGTTTTCATCCCTGAAGGGGTTCAAAGAAGGCCTAGAATGCACCGTTTGTCTCTCCAAATTCGAGGACACGGAGACTCTAAGATTGCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCCACATGCCCTCTCTGTAGACGCAGGGTTGAAGCAGGGGACATCAAGAACCTCAACTACTCCCTAAGCTCAAGCTTCCTCCGAGTTCCTTCAAATCTCACCGAGGATCTAAACCTTGAAATCTTCGTTCAGAGAGAGCCTTCTCATCAAGGGTCATCGAGAAGAGGCTTTAAGGATGCGGGGAAGTGCAAAAAACAAGAACTGCTTATTGGTGATGGCAGTGGCGGTAGTGGTGCCACAAAGTGGAACAAACATGTTCATGTGACAAACCATAAAATAACTATCTCTGATGTTTTTACGAGGAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTGTCGTTGAGCAGCCAGATGCTTAATGATGTTAGCTGCAGGAGATTCTGTTTCAGTTCTCTGGAATCCACCGAAGACGGTGGAAAGGTTCACGGAACTTGGCGTTGTAAGGAGGAAGGAAAGTGGTTTACTGAACTGAATCCTAGTGAGAAGAGGTGCATGTCTGAGATTGTCAATGTTCCGAGGTATGCAGAAATGGAGAAGGAGAATAGGATCGGAGGAAGTGTGAGATCTAGTGAGAGATTGGGGAGAATTTGGTTGCCAATTGCACGAAGAACGCTCCAATGGATTGCCAAACAAGAAAGGAATCGGAGTGAATTAGAATACAAAACCCCTGCTTCAAATGTTTGA 1206 0.4411 MVTSPLQKMCNTIMFNPFKNHLPIMFMMLFSFPFNVQSQDKEDEEQNLPQDPQTVHPSKGVVIAVLSTMFAITLILLLYVKFCRVNPHQLLTRNSNLQNSQGLSRSSLRVCGIDKEVVKTLPFFTFSSLKGFKEGLECTVCLSKFEDTETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNYSLSSSFLRVPSNLTEDLNLEIFVQREPSHQGSSRRGFKDAGKCKKQELLIGDGSGGSGATKWNKHVHVTNHKITISDVFTRSRWSDLNSSDMLSLSSQMLNDVSCRRFCFSSLESTEDGGKVHGTWRCKEEGKWFTELNPSEKRCMSEIVNVPRYAEMEKENRIGGSVRSSERLGRIWLPIARRTLQWIAKQERNRSELEYKTPASNV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1117 401 CDD RING-H2_EL5_like 137 180 - -
Pvu9g1117 401 SUPERFAMILY RING/U-box 118 184 - -
Pvu9g1117 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 306 - -
Pvu9g1117 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 313 393 - -
Pvu9g1117 401 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Pvu9g1117 401 PANTHER RING-H2 FINGER PROTEIN ATL4J 313 393 - -
Pvu9g1117 401 PANTHER RING-H2 FINGER PROTEIN ATL4J 30 306 - -
Pvu9g1117 401 Pfam Ring finger domain 137 180 IPR001841 -
Pvu9g1117 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Pvu9g1117 401 SMART ring_2 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1117 Pvu-Chr9 16354851 16356325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1117 47 388 C3H Transcription Factor Family AT2G20030 40.970 1.40e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1117 K10664 - gmx:100816668 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1117 9 16354851 16356325 Pvu1g0759 1 9990242 9991653 PCT