Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1101 ATGGAACCCAGCGAAACGGCTTCGGATTCAGCTCCGCGAAAATTGGTCAGGCAATTGGATTTCACCCTCGTTCATGAAGATCCTCCGCACCTGAAACTGCCTCCTCCGTCGCCACCGCAGCATTCGCTTCTGCCACCCCCATCGCATTCTCTGTTGCAGTTGCAGTTAAATTTGCAGTCACCGGGGCAACGCCCGTGGTTATATTCCGAGCCGCAGGAGCAACAGCAACAGCCCTGGCTACATTCACCGCGACCGAAGCTAGTTTCGTGGGTTAGTAGATTTCCGCCGGTACAGAAACCTCCCGTTAAGGTGTTGCCAGTGGTGAAGCCAGATTCTCCTAGATCACAACCTCGATTTAATGTGGAATCAAAGGACACGAATCCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGTCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAACGAAACCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCACAAGAACAACGAAATTCCAAGGAAAATGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACTGAAAGAAGAGCAATTTTTCACAGAGAGTATAATCAAGTTCACATCAAACAGGGAACTAGTGATGCCGTAACCGAAGTAGTTGGATCATCTGGCTATAGAAACCATATAACACCCAAGAGGAGAAAAATTCAGGAAATGTTTTCTGGAAAGGCAACTGTGGATCAAACTGTTAACACGACTGCCCAATACCTGCAGGCAATTGATCGTATGGCTTCACCGTCTTCATCTCTGTCAGATTCCTTTGTTTTTGACCAGGTCAACTCAAGAATTTCAGGGTCTTCAAGGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGTTCACTTTTTGTTATTCTCGCACGTGTAGCTGCAAAGACAAATGCAGAAACGAGAGAGAAAATAGATCGAAAAACAAAAGCTGGGAACTTCAAAACTTCCGTTGCTTCATCAGCTAAATCGCCACAAGAAACTAAAGATGTCCGCCAGCCGGTTTGTGATGATCACGTGAATAAAGCTGTGGCAGATGCAGTTGATATTGACAATTATAACAGGCCATTGTCACCAGAAACATTGGCATTGATGTGTGATGAACAGGACAGTATGTTTTTTGGAAATACTTCTGCCGATGGAGCTTCGCATAAAAACATAATTCAAAAGTCATTAAATTCTGATTACGGAGAGCAGGAAAGGCTTATAATGACCAAGCTCTTGGATGTTCTTCGCGAACTCGTTACTCTTGGTAGTATAAAAGGTTAG 1512 0.4352 MEPSETASDSAPRKLVRQLDFTLVHEDPPHLKLPPPSPPQHSLLPPPSHSLLQLQLNLQSPGQRPWLYSEPQEQQQQPWLHSPRPKLVSWVSRFPPVQKPPVKVLPVVKPDSPRSQPRFNVESKDTNPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQEQRNSKENEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYNQVHIKQGTSDAVTEVVGSSGYRNHITPKRRKIQEMFSGKATVDQTVNTTAQYLQAIDRMASPSSSLSDSFVFDQVNSRISGSSRSVLADVLQPQNVKNLCSLFVILARVAAKTNAETREKIDRKTKAGNFKTSVASSAKSPQETKDVRQPVCDDHVNKAVADAVDIDNYNRPLSPETLALMCDEQDSMFFGNTSADGASHKNIIQKSLNSDYGEQERLIMTKLLDVLRELVTLGSIKG* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1101 503 MobiDBLite consensus disorder prediction 394 409 - -
Pvu9g1101 503 ProSiteProfiles CRC domain profile. 130 252 IPR005172 -
Pvu9g1101 503 PANTHER TESMIN/TSO1-RELATED 1 502 IPR028307 -
Pvu9g1101 503 MobiDBLite consensus disorder prediction 23 48 - -
Pvu9g1101 503 MobiDBLite consensus disorder prediction 387 413 - -
Pvu9g1101 503 SMART CXC_2 129 169 IPR033467 -
Pvu9g1101 503 SMART CXC_2 212 253 IPR033467 -
Pvu9g1101 503 MobiDBLite consensus disorder prediction 29 45 - -
Pvu9g1101 503 MobiDBLite consensus disorder prediction 108 128 - -
Pvu9g1101 503 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 502 - -
Pvu9g1101 503 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 131 166 IPR005172 -
Pvu9g1101 503 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 215 249 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1101 Pvu-Chr9 16163239 16166992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1101 110 502 CPP Transcription Factor Family AT4G29000 48.252 1.26e-122 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pvu9g1101 TCR 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1101 - K21776 gmx:100811459 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1101 9 16163239 16166992 Pvu9g1101 9 16163239 16166992 ECH