Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1088 ATGTTTGCAGTTACACCATATTCTCCGGCGACCACGCCGGTTGACGTCATCCCTCCGCCGTTTCCGCAACCAGTACCGCCCCCATTCCATTCCCCGCCGTCACCATCGATGTTTCTGACGCCTCCAGCCCCGTCCTCGCCGTCGCCGGAAACTTTATTCTTCCAAGGTTTGCCGCCACCGCCATCTTCAGTTACGCCTATTCCTCTGACGGTGCCGTTGTTGCCGTCTCCGTCACCGGAATCTCTCACACCGCCATTTCCGCCGTTCGGAGTTTCACAATCGCCTCCGGTTCCGACCGCCGCAGCCCAGCCACCGCCGTTTCCATATGCCACAGCGCCTTCAACGACGTCGTTTCCGCCGTTTGCAGTTGCGCCATCGCCTCCGTCTCCGACCGCCAATTTTCAACCTGCATTGCCAGATATGCCTCTGGCACCGGAAGCGGTGACGACGTCGACTGTTCCTCCACCGCCTTTACCTCCTTCGTTCACGACGGAACCAACCTTGGCAACGCCGTGGAGCCCCGTGTTGCCGTTATCTGCGCCGGAAGTAAATTTGCCGGTGGCTGTGGATTTTCGGAAGGCGTCAACATTCCACGTGTCAAGTGGGCTCATTTTTGGGCTTGTAATTGGAGCAATCCTTTTGGTGTTTGTTTTTAGTATTGGATTAGTTCTATGCAGGATTAGGAAGAAAAACAAACAGAAGAATCTATGCACGCGTCGCTCTAAGGAATCACCACCGTCCGTTGAATCCAAGGGATCTCATGTCATTCGAGTGCTATCAAATCCAACGCTGCCACCACATCCCACTTCAGGTTCTTTTAATTCAGTGTCTGTTAAAGCAATTCCAAACCATGCTCCAAGGGCAGCCTTTGGTCCCGGGAATGATACTTTCACGTATGATGAAATATTGGTGGCCACTAGTTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGTTTTGGCTATGTGTACAAAGGAGTTCTCCCGTGTGGAAAGCAAATTGCGGTTAAGCAGCTAAAATCAGGAAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGCCGAGTGCATCATAAGCATCTTGTTGAATTGGTTGGCTACTGTGTTATTGGGGCAGAGAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTGCATGGGGAGGGGAATATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTTCATGAAGATTGTAATCCAGCAATTATTCACCGTGATATTAAAGCATCTAATATTCTTCTTGATTTTAAGTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAATCTTACCAAACACCGATAGTCGCATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATCTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGACGTATATTCCTACGGCATCATGCTTTTAGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCAGGGAATGAGAGCTTGGTTGACTGGGCTAGGCCATTGCTTTCTCGAGCACTACAAGATGATAACTTCGACCTTGTTGATCCAAGGTTGCAGAAAAATTACGATGCTGATGGGATGGTTAGAATGATTACATGTGCAGCTGCTTGTGTGCGCCAGTCATCCACCCTTCGACCTCGTATGAGCCAAATTGTTGGAGTCTTAGAAGGAGTGGTTTCTCTTTCTGATCTTGTTGGAGATGTTACACCGGGACATACCACAGTACACAATTGGTCAGATTATTTAGATTATGGTGCCAACCAAGACCAGAAGGACTTCAGAAGTTTCGATTTGGCATTATCATCTCAGAAATACAGCTCCAGTGGGTACATTGAAACAACTAGTGCTTGTGGCCTTTACTCATCAGGCTCAGGTAGTGAGGCTCACCAATCATTTCGAGACATAATATAA 1995 0.4792 MFAVTPYSPATTPVDVIPPPFPQPVPPPFHSPPSPSMFLTPPAPSSPSPETLFFQGLPPPPSSVTPIPLTVPLLPSPSPESLTPPFPPFGVSQSPPVPTAAAQPPPFPYATAPSTTSFPPFAVAPSPPSPTANFQPALPDMPLAPEAVTTSTVPPPPLPPSFTTEPTLATPWSPVLPLSAPEVNLPVAVDFRKASTFHVSSGLIFGLVIGAILLVFVFSIGLVLCRIRKKNKQKNLCTRRSKESPPSVESKGSHVIRVLSNPTLPPHPTSGSFNSVSVKAIPNHAPRAAFGPGNDTFTYDEILVATSCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELVGYCVIGAERMLVYEFVPNNTLEFHLHGEGNIFLGWTTRIKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFKFEPKVSDFGLAKILPNTDSRISHLTTRVMGTFGYLAPEYASSGKLTDKSDVYSYGIMLLELITGRPPITAAGSGNESLVDWARPLLSRALQDDNFDLVDPRLQKNYDADGMVRMITCAAACVRQSSTLRPRMSQIVGVLEGVVSLSDLVGDVTPGHTTVHNWSDYLDYGANQDQKDFRSFDLALSSQKYSSSGYIETTSACGLYSSGSGSEAHQSFRDII* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1088 664 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Pvu9g1088 664 Gene3D Phosphorylase Kinase; domain 1 275 384 - -
Pvu9g1088 664 CDD STKc_IRAK 315 585 - -
Pvu9g1088 664 ProSiteProfiles Protein kinase domain profile. 309 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1088 664 SMART serkin_6 309 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1088 664 Pfam Protein kinase domain 310 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1088 664 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK14 43 631 - -
Pvu9g1088 664 SUPERFAMILY Protein kinase-like (PK-like) 291 583 IPR011009 -
Pvu9g1088 664 Gene3D Transferase(Phosphotransferase) domain 1 385 592 - -
Pvu9g1088 664 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 43 631 - -
Pvu9g1088 664 MobiDBLite consensus disorder prediction 12 61 - -
Pvu9g1088 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Pvu9g1088 664 MobiDBLite consensus disorder prediction 1 61 - -
Pvu9g1088 664 MobiDBLite consensus disorder prediction 76 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1088 Pvu-Chr9 15972204 15976755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1088 156 658 Trihelix Transcription Factor Family AT4G32710 49.708 3.53e-139 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pvu9g1088 Pkinase 5.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1088 - - var:108321806 903.279