Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1038 ATGGATGAATATTCTGGTAAAAGAGTTATTGATGGGATGGTAGTCCCTAGAAAGGGGGTCGGCCATGTGTTTAGAGACACTGCTAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACCTCTAAAAGTGCTCAAAATGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCTATCCAATCTTCTTCCGCTGGAAAGGAAGCAGTTGGAAGTTCCTCTAGAACTTTTTCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAATCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGCGTGCAGGATGAATCAGAAGTTTCAAAACTCGGTCCTCCCCCGGAAAAAAGCCAGACAGGGCTTCAAGCTGAAATGGAAAGTACAGTGTCTGGTACTGTCATGATGGAAGTAGGAAGCTCAACTGTAGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGAATTAACGGTCAGGAAATTAAAAACACTGGTCCAGTGATGCGTGCTGGTACCAGTAGGTATGGACTGAGGAACCTCAAATGCAACTCTATTTCTGATGTCCTCCCTGCCGGCTGTTCGCCTTCAGATTCAACCCTTAACAGAAGGAAGGATATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGTTCCTCTGCTAGAGGGAAGAAAATGAGTGGCTCTTCATTAGAAGGGCGGAATTCTGGTTCCAGAAATGGCATATCTATTTCTGATTCAAGAATATCTAGGAATGCTCCTCCTCACAGGGACAGGTCTGACAGCAACATGGCACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCAAATCCCGTGTCACCCAATCAGTCCCCTGTCACGATACCTTCTTTGCCTCATTCTGGTGGTCGTAATGCTCCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCAAGCTCTCATAGTAGACCGGGTACTGGCAGTGAGGAGTTATACGGTGTTATGCCTGGATCTCCTTCAGAATATGGCCTCACTCATTCTATAATGAATCTGGATAGCTTTCGGCGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGAATTGAACACGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGGCTTAACTTCTACGATCCACACAGAGACATGCGATTGGACATTGATAACATGTCTTATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCAGACTGCCTAAAGAAAAGTTTCTTCCAGTCCTCACCCTCTGAAACTGCAGTTGACAGTGGCAATGAAGCCAAGGATGATACCAAATGCAGCATTTGCCAGGAGGAATATGTGGTTGAGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTTCGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGGACTGTCAAATTCATTCCCATCTCAATGA 1632 0.4485 MDEYSGKRVIDGMVVPRKGVGHVFRDTANAKDRNGQVCSRLTCSSRVNTSKSAQNGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFSKTSSPGKPLIKPRKKSSSQLETDSSETSSVQDESEVSKLGPPPEKSQTGLQAEMESTVSGTVMMEVGSSTVVSNSRSRRNFHPKPGINGQEIKNTGPVMRAGTSRYGLRNLKCNSISDVLPAGCSPSDSTLNRRKDMIKKRNCEGEGSSSARGKKMSGSSLEGRNSGSRNGISISDSRISRNAPPHRDRSDSNMAPVRTRKSISGHARGRLSSQGNANPVSPNQSPVTIPSLPHSGGRNAPGVSHRTSVDSSLSCPSSHSRPGTGSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEHDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSDCLKKSFFQSSPSETAVDSGNEAKDDTKCSICQEEYVVEDELGSLHCEHMYHVVCIQQWLRLKNWCPICKASVGLSNSFPSQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1038 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 534 - -
Pvu9g1038 543 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 206 358 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 42 91 - -
Pvu9g1038 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 534 IPR045191 GO:0061630
Pvu9g1038 543 Coils Coil 394 414 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 218 234 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 238 266 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 42 141 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 155 186 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 267 281 - -
Pvu9g1038 543 Pfam Ring finger domain 489 531 IPR001841 -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 107 121 - -
Pvu9g1038 543 SUPERFAMILY RING/U-box 484 536 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 292 318 - -
Pvu9g1038 543 MobiDBLite consensus disorder prediction 327 350 - -
Pvu9g1038 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 535 IPR013083 -
Pvu9g1038 543 SMART ring_2 490 530 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1038 Pvu-Chr9 15421014 15425860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1038 376 531 C3H Transcription Factor Family AT2G15530 43.312 6.65e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1038 - - gmx:100787213 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0609 1 7069836 7072476 Pvu9g1038 9 15421014 15425860 PCT