LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g1018	ATGTCGATGTGGTCTCTAGGTAGAAGATGCTCAAGCAGCGAAATGGCCTCCGTTTCAATTGCCATCTTTCCAGCATTTGGCAGCCCCATCTTAAATATAGAAGGTTACTCCAACCTAAGAAAATACGTCATTGCTCCCTATGACCGTAGATATCAATTGTGGCAAACGTTCCTAGTGGCTTTGGTAGTGTACTCTGCATGGGCATCTCCCTTCGAGCTAGCTTTCAGAAAACTGTTAGTTGGGTCGTTGTTGAGCGTTGATCTTCTTGTTGATGCCTTCTTTGCAGTTGATATAATCCTTACTTTTTTTGTGGCTTACTTGGATACATCAACTTATCTTCTTGTCGACGACTACAACAAGATTGCTCTCAGGTACGTAAAAAAGTTGCACTTCACCATGGATCTAGCCTCCACTCTGCCAATTGAGCAGATATATCAAATTCTGACGGGCAAGCCAACCAAAAGTGAGGTATTTGGTTTCCTAGTTATGCCAAGACTCTGGCGATTGAGGCGTGTTAGCGAACTCTTCGCAAGGCTAGAAAAAGACATACGAATAAACTATTGGGCAACAAGATTTTGCAAAGTTACATGCGTTACGCTATTTGCAGCGCACTTCGCAGGCTGCATGTTTTATTGGTTGGCTGTCCAGCACAAAACACCGAACAACACATGGATAGGAAACAAAACACAGGATTTTCATGAATTGGGCATCGGGTTGGGTTACACTTATTCTGTCTACTGGTCTGTTGCAACCCTTACCACAGTTGGATATGGAGATTTTTATGCAGTGAATTTAACAGAGAAGCTTTTCTGTATTTTCTACACGCTCTTTAACATCGGCCTCGGTGCATATGTAATTGGAAACATGACAACTTTGTTGGTTCATATCTCTGTCCGAACCTTTGCCGTGAGGGATGTCTTCGACAAAATATTACAATATGCAAACAAAAATAGACTCCCAGAAGGATTAAAGGAGCAAATATTGGCACACATGCAATTGAAGTTCAAGACTGCAGAGTTGCAGCAAGAAGTGCTGCAAGACCTACCTAAAACTATAAGATCCTGTATTGCTCAGCATCTTTTCAAAAACATTGTTGAAACAGCATATTTATTTAAAGGAGTGTCAGAAACGAAGGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAAAATATTTTTACATCTTGGTATCTGGGTCACTGGATGTGTTGATATACAATACTGGGTCCGAACAGTTTTTATTCGAACTTGAATCTGGAGACATGGCAGGAGAAATAGGCGTGATGTTTAATATTCCACAACCTTTTACAGTGAGAAGTAGAGGGCTCTCCCAGGTCATACGAATCAATCATCATCACCTCAAGCAGATGGTGCAACCATTTAGTGACGATGGGAAGGCAATCATGTACAACTTTATTCAGTATTTGAAGGGCCTCAAAGGCAAGGTGCTAGAAGAAATATCGTGTGTACCAGAATTGCTGGGTGACCTTGAGCATCTGACACAAAATGAGGGTACACTCGATGAAGATTCCAGATATCAAGATCCATATAAAAAAGGAAAAACAGGAAATTACAAACCACTGTCAAGCCCAGTCCCCGTTAGAGTTAAAATCCACGGACACCATCCCAATGAAAACAAAATGGGAAATGGAACAACGCCAAAGCTAATACTTCTCCCAAATTCGGTTGAAGATATTTTCAGAGTTGCAGAGAGAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCTCAGAAGTAGAACAATTAAACGCGCTAAGGGAGAATGATGAGTTATATATCCTCTAA	1830	0.4109	MSMWSLGRRCSSSEMASVSIAIFPAFGSPILNIEGYSNLRKYVIAPYDRRYQLWQTFLVALVVYSAWASPFELAFRKLLVGSLLSVDLLVDAFFAVDIILTFFVAYLDTSTYLLVDDYNKIALRYVKKLHFTMDLASTLPIEQIYQILTGKPTKSEVFGFLVMPRLWRLRRVSELFARLEKDIRINYWATRFCKVTCVTLFAAHFAGCMFYWLAVQHKTPNNTWIGNKTQDFHELGIGLGYTYSVYWSVATLTTVGYGDFYAVNLTEKLFCIFYTLFNIGLGAYVIGNMTTLLVHISVRTFAVRDVFDKILQYANKNRLPEGLKEQILAHMQLKFKTAELQQEVLQDLPKTIRSCIAQHLFKNIVETAYLFKGVSETKAEYYPSKVDIILQNEMPKYFYILVSGSLDVLIYNTGSEQFLFELESGDMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHLKQMVQPFSDDGKAIMYNFIQYLKGLKGKVLEEISCVPELLGDLEHLTQNEGTLDEDSRYQDPYKKGKTGNYKPLSSPVPVRVKIHGHHPNENKMGNGTTPKLILLPNSVEDIFRVAERKFGKRGSKILMADGSEVEQLNALRENDELYIL*	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g1018	609	PRINTS	EAG/ELK/ERG potassium channel family signature	87	97	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Pvu9g1018	609	PRINTS	EAG/ELK/ERG potassium channel family signature	98	107	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Pvu9g1018	609	PRINTS	EAG/ELK/ERG potassium channel family signature	241	258	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Pvu9g1018	609	PRINTS	EAG/ELK/ERG potassium channel family signature	267	278	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Pvu9g1018	609	PRINTS	EAG/ELK/ERG potassium channel family signature	285	294	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Pvu9g1018	609	Gene3D	Jelly Rolls	338	483	IPR014710	-
	Pvu9g1018	609	SUPERFAMILY	cAMP-binding domain-like	301	481	IPR018490	-
	Pvu9g1018	609	Pfam	KHA, dimerisation domain of potassium ion channel	540	608	IPR021789	-
	Pvu9g1018	609	Gene3D	-	52	296	-	-
	Pvu9g1018	609	Pfam	Cyclic nucleotide-binding domain	382	464	IPR000595	-
	Pvu9g1018	609	PANTHER	POTASSIUM CHANNEL KAT3	20	608	-	-
	Pvu9g1018	609	ProSiteProfiles	cAMP/cGMP binding motif profile.	361	480	IPR000595	-
	Pvu9g1018	609	SMART	cnmp_10	361	478	IPR000595	-
	Pvu9g1018	609	CDD	CAP_ED	374	474	IPR000595	-
	Pvu9g1018	609	Pfam	Ion transport protein	52	299	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Pvu9g1018	609	SUPERFAMILY	Voltage-gated potassium channels	46	294	-	-
	Pvu9g1018	609	PANTHER	POTASSIUM CHANNEL AKT1	20	608	IPR045319	GO:0005249\|GO:0006813
	Pvu9g1018	609	ProSiteProfiles	KHA domain profile.	540	609	IPR021789	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g1018	Pvu-Chr9	15127481	15134105	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g1018	1	609	Ion Channels	AT4G32650	53.503	0.0	634

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g1018	K21867		-	gmx:100794620	996.112

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g1018	9	15127481	15134105	Pvu9g1018	9	15127481	15134105	ECH