Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1015 ATGGGAGGGGTGGCAGTATTGCACTCTGAGTCTCTGCAGCTTGACTGCAAGGACACGAAGCATGTGACTGAGAAAGATGTGTGTAATCATCTACCATCAAATGAAGAGCACATACTTGGAGAAGAATCAAGTCAAAAGATCAATAATTTGCGTGAGAGAGGAGATATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGATCAGAAGCACAGACACGATGTTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACCGGAGGATGTGAAAATGTCTTCCACTGCTTCAAATGTGGTTGTTGCTACTCAACTCAGATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTCGAGTACTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCTTGCGGACATACAATACATAAGAGCTGCCTGAATGAAATGGGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCCAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGTTTGACTTGCAGATTGCTGCTACACCAATGCCTGAAGCATATCGAAACAAAATGATTTGGATTCTTTGTAATGATTGCACTAAAACTTCTCACGTCCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAATCCTACAACACACGACAGATAAGAGGCTGA 918 0.4237 MGGVAVLHSESLQLDCKDTKHVTEKDVCNHLPSNEEHILGEESSQKINNLRERGDMEYGCQHYRRRCRIRAPCCNEIFNCRHCHNEAKNNINIDQKHRHDVPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKKQYHCSGCGICRTGGCENVFHCFKCGCCYSTQMKNSHPCVEGAMHHDCPICFEYLFESVNDVLVLPCGHTIHKSCLNEMGEHFQYACPLCSKSVCDMSMIWEKFDLQIAATPMPEAYRNKMIWILCNDCTKTSHVQFHLVAQKCLNCKSYNTRQIRG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1015 305 SUPERFAMILY CHY zinc finger-like 55 131 IPR037274 GO:0008270
Pvu9g1015 305 SUPERFAMILY RING/U-box 195 247 - -
Pvu9g1015 305 Pfam Ring finger domain 195 238 IPR001841 -
Pvu9g1015 305 SMART ring_2 196 238 IPR001841 -
Pvu9g1015 305 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 17 305 - -
Pvu9g1015 305 ProSiteProfiles Zinc finger RING-type profile. 196 239 IPR001841 -
Pvu9g1015 305 ProSiteProfiles Zinc finger CHY-type profile. 53 129 IPR008913 GO:0008270
Pvu9g1015 305 ProSiteProfiles Zinc finger CTCHY-type profile. 131 195 IPR017921 -
Pvu9g1015 305 Pfam CHY zinc finger 60 141 IPR008913 GO:0008270
Pvu9g1015 305 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 17 305 - -
Pvu9g1015 305 Gene3D - 267 305 - -
Pvu9g1015 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 241 IPR013083 -
Pvu9g1015 305 Pfam Zinc-ribbon 243 301 IPR039512 -
Pvu9g1015 305 SUPERFAMILY Zinc hairpin stack 132 189 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1015 Pvu-Chr9 15094895 15100809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1015 49 305 C2H2 Transcription Factor Family AT3G18290 38.403 4.24e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1015 K10144 - gmx:100812023 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1015 9 15094895 15100809 Pvu9g1015 9 15094895 15100809 ECH
Pvu1g0583 1 6662038 6667903 Pvu9g1015 9 15094895 15100809 PCT
Pvu9g1015 9 15094895 15100809 Pvu1g0803 1 11569140 11571304 PCT