Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1011 ATGCACGTGAAAGCGGCACAGTCATCGTCCCGGGATCGGACGCATGAATTCCACAGCATCACCGAGAGGTTGAAGAAGTCCGGATCAGGGCCCGCAGGGCCCAGCAGTAGCAGTTCTTCCAGATCGGAGGAACAGCGATCATCGATCGCAAATCAATCGGATTTCAATAGAAGGGCCTCCAAAATCGGCTTCGGAATTCACCAAACGTCTCAGAAGCTCTCCAAGCTCGCTAAATTGGCGAAAAGGACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTGGTGTTATTAAGCAGGATATCACTGCTTTAAACTCTGCGGTGGTGGATCTTCAGTTGCTATGCAACTCTAGGAATGAGAGTGGAAATGTTTCTGTGGACACAACGAGCCATTCGAGCACCGTGGTGGATGACTTGAAGACGCGGTTGATGAGCGCTACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCTTCGAAGGATTCGGCAAATCCTTTCATCCGGCAACGGCCTTTGGCTGCTAGGGCGGCAGCTAGTACTTCTAATTCCCCTGCTCCCTGGGCTAATGAGTCGCCGTCTTCATCTCAGGTGTTTCCCAAGAAGCAAATGGACACAGAGAGTCAACCATTGTTGCAGCAGCAACAGCAGCAGGATGTAGTTCCATTACAAGACAGTTACATGCAAAGCAGAACCGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATTTTTAATCAGCTAGCGACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATCGATGAAAACATGGACGATACATTGTCAAACGTAGAGGGAGCACAAGGGGCTTTGTTGAAATATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTGATGTTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1011 0.4629 MHVKAAQSSSRDRTHEFHSITERLKKSGSGPAGPSSSSSSRSEEQRSSIANQSDFNRRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSVDTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAARAAASTSNSPAPWANESPSSSQVFPKKQMDTESQPLLQQQQQQDVVPLQDSYMQSRTEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1011 336 PANTHER SYNTAXIN-32-LIKE 2 335 - -
Pvu9g1011 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pvu9g1011 336 SUPERFAMILY t-snare proteins 52 299 IPR010989 GO:0016020|GO:0016192
Pvu9g1011 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Pvu9g1011 336 SMART tSNARE_6 239 306 IPR000727 -
Pvu9g1011 336 MobiDBLite consensus disorder prediction 1 23 - -
Pvu9g1011 336 Gene3D - 47 299 - -
Pvu9g1011 336 Pfam SNARE domain 280 332 IPR000727 -
Pvu9g1011 336 CDD SNARE_syntaxin5 247 320 - -
Pvu9g1011 336 MobiDBLite consensus disorder prediction 30 54 - -
Pvu9g1011 336 MobiDBLite consensus disorder prediction 1 54 - -
Pvu9g1011 336 MobiDBLite consensus disorder prediction 195 235 - -
Pvu9g1011 336 MobiDBLite consensus disorder prediction 192 235 - -
Pvu9g1011 336 PANTHER SYNTAXIN 2 335 IPR045242 -
Pvu9g1011 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1011 Pvu-Chr9 15060168 15064627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1011 1 336 SNARE and Associated Proteins AT3G24350 63.934 2.70e-146 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1011 K08490 - gmx:100811494 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1011 9 15060168 15064627 Pvu9g1011 9 15060168 15064627 ECH