Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1003 ATGGAAAAAGAAGAGATGGGTGTGGATTACTATGATGTATTGAAGGTTAACAGAAATGCTACGGAGGATGATTTGAAGAAAGCATACAGAAAGTTGGCCATGAAATGGCACCCTGATAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAATTTCAAACAGATCTCTGAGGCTTATGAGGTGCTGAGTGACCCTCAGAAAAGGGTGGTTTATGATCAGTATGGAGAAGAAGGGTTGAAAGATAAGCCACCTGATGAACCATCAAATGGGTTCAACCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGGCCAGGGAAGTCCAAGAGATTCCCCTCTGATGGAGGGACAACACCGTTTGGTGGATTTAGTGCAAATGATAATAATTTTCGATCATATAGTACTGGACGGGGGAATGTGCTAAAGAAGCCACTACCTGTGGAATCCAAACTGCCTTGCTCTTTGGAGGAATTGTACTCTGGATCTACAAGGAAAATGAAGATCTCAAGGAACACCGTGGATGCTCACGGATGGACAGTTCCGGAAACAGAGATATTAACCATTGATGTGAAGCCGGGTTGGAAGAAAGGGACAAAGATTACGTTCCCTGAGAAAGGGAATCAACAGCCAAATCAACTGGCAGCAGACCTTGTGTTTGTGATTGACGAGAAGCCTCATGATGTGTTCAAGAGAGACGGGAATGACCTTATTGTGAACAAAAGGGTATCTTTGGCTGAGGCCATTGGAGGAACCACAATAAACCTCACAACACTTGATGGACGTACTTTAAATGTTCCAGTGAGTGAAATTGTGAGTCCTGGTTACGAGATGAATGTTGCAAAAGAAGGGATGCCAATAACAAAGGAGCCTGGTCATAGGGGTGATTTGAGGATCAAATTTGATGTCAGTTTTCCAACAAAGTTGACCCAAGAGCAACGAGCAGGACTCAAGCGAGCACTCACAACTTGA 1002 0.4371 MEKEEMGVDYYDVLKVNRNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYEVLSDPQKRVVYDQYGEEGLKDKPPDEPSNGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSKRFPSDGGTTPFGGFSANDNNFRSYSTGRGNVLKKPLPVESKLPCSLEELYSGSTRKMKISRNTVDAHGWTVPETEILTIDVKPGWKKGTKITFPEKGNQQPNQLAADLVFVIDEKPHDVFKRDGNDLIVNKRVSLAEAIGGTTINLTTLDGRTLNVPVSEIVSPGYEMNVAKEGMPITKEPGHRGDLRIKFDVSFPTKLTQEQRAGLKRALTT* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1003 333 SUPERFAMILY HSP40/DnaJ peptide-binding domain 158 238 IPR008971 GO:0006457|GO:0051082
Pvu9g1003 333 SMART dnaj_3 8 67 IPR001623 -
Pvu9g1003 333 Gene3D DnaJ domain 8 114 IPR036869 -
Pvu9g1003 333 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 6 332 - -
Pvu9g1003 333 CDD DnaJ_C 158 319 - -
Pvu9g1003 333 Pfam DnaJ domain 9 72 IPR001623 -
Pvu9g1003 333 SUPERFAMILY Chaperone J-domain 8 113 IPR036869 -
Pvu9g1003 333 SUPERFAMILY HSP40/DnaJ peptide-binding domain 239 325 IPR008971 GO:0006457|GO:0051082
Pvu9g1003 333 MobiDBLite consensus disorder prediction 114 137 - -
Pvu9g1003 333 Gene3D - 157 235 - -
Pvu9g1003 333 Gene3D - 236 333 - -
Pvu9g1003 333 PRINTS DnaJ domain signature 11 29 IPR001623 -
Pvu9g1003 333 PRINTS DnaJ domain signature 29 44 IPR001623 -
Pvu9g1003 333 PRINTS DnaJ domain signature 47 67 IPR001623 -
Pvu9g1003 333 PRINTS DnaJ domain signature 67 86 IPR001623 -
Pvu9g1003 333 ProSiteProfiles dnaJ domain profile. 9 75 IPR001623 -
Pvu9g1003 333 Pfam DnaJ C terminal domain 158 316 IPR002939 -
Pvu9g1003 333 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Pvu9g1003 333 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 6 332 - -
Pvu9g1003 333 CDD DnaJ 9 64 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1003 Pvu-Chr9 14992452 14994797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1003 10 74 C2H2 Transcription Factor Family AT1G74250 39.130 1.45e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1003 K09510 - gmx:100796426 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1003 9 14992452 14994797 Pvu9g1003 9 14992452 14994797 ECH