Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1000 ATGGATAAAGTAAATAAGACGTGTGCCAAAGATGAAGAACGTTCAATCCGAGTCACCAGAGCAAAGACTAGAGCCTTGAGAGGAATTCCTCCCCGTTCAAGACCTTCCTCTAAAAATGAACAGAAAAACATGCCTCGAGCAAATTCCAAAAGAGCAGCCACTTCTGAAGACCAAACTTCTGTGGTTGTTCCCGCTCTTATTCAAAATAAGAGAAGGGCAGTTCTTACAGATGTAACAAATGTTTGCACAAAATCACTTGATAAGTGTCCTGAGGCATCAAAATTTACGGCCAAAGGAGTTTATACAAAGAAAAGCACAAAAGTAGCTTCAGGTGTTTCCTCTGAAGTCTCATCAACACAAGAGAATGTTGGAGCAAAGTTAGCTGAAGATTTATCAACAATAAGGATGGTAGAATCCATTGACACCATAAGTGAACGTGTTATACCATGCACCAAGCCGTCAATGCAAGATTCTGTGAAATCTGATGAACTTCTGAGCTCTTCAAAAAATGGTTTTTCCATGATCTCAAGTGCTACTAACTTTAAGCAACAGAATTTAGATATAGATGTGATTTCTGAGAAGCCAATAACCTCAAACTCCCTTGCTATAGTGGACATTGATTCAGAGTTAAAGGATCCTCAAATTTGGAGTTGTTATGCCTCTGACATGTACAATAACATTCGAGTCACAGAGCTTAAAAGCAAAACATTGACTAACTACATGGAGAAGTTGCAGACAGATATTAATCCAAGTATGCGTGGCATTCTGGTGGATTGGCTTGTGGAGGTTTCTGAGGAATACAGATTGGTTCCAGACGCTCTTTACCTGACAGTGAACCTCATTGATCGGTATCTCTCAACTAAATTCATTCAGAAGCAAAGGCTACAGTTGCTGGGTGTTACTAGCATGCTGATTGCATCAAAGTACGAAGAGATGTGCCCACCTCGAGTGGAAGAATTTTGCTTCATCACAGATAACACATACACAAAAGAAGAGGTACTGAAAATGGAGAGAGAAATACTGAACGTGATGCATTTTCAGCTATCTGTTCCCACAATCAAAACATTTCTGAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAATTCTTGGCAAATTATTTAGCTGAGCTTGCTCTGGTTGAATATAGCTTCTTCCAGTTTCTTCCTTCTCTTGTAGCTGCATCTGCTGTGTTCCTTGCCAGATGGACCTTGAACGATTCAGAACATCCATGGAATCCAACTTTGGAGCACTATGCAAACTACAAAGCTTCAGAGCTTAAAACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATTCCAAAGGCTGTCCCCTCAATGCTGTCCGTGATAAGTATAAACTACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCGGTACAGTCACTCTTCGAGGCCCAAGTGTAA 1455 0.4062 MDKVNKTCAKDEERSIRVTRAKTRALRGIPPRSRPSSKNEQKNMPRANSKRAATSEDQTSVVVPALIQNKRRAVLTDVTNVCTKSLDKCPEASKFTAKGVYTKKSTKVASGVSSEVSSTQENVGAKLAEDLSTIRMVESIDTISERVIPCTKPSMQDSVKSDELLSSSKNGFSMISSATNFKQQNLDIDVISEKPITSNSLAIVDIDSELKDPQIWSCYASDMYNNIRVTELKSKTLTNYMEKLQTDINPSMRGILVDWLVEVSEEYRLVPDALYLTVNLIDRYLSTKFIQKQRLQLLGVTSMLIASKYEEMCPPRVEEFCFITDNTYTKEEVLKMEREILNVMHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLARWTLNDSEHPWNPTLEHYANYKASELKTVVLALQDLQLNSKGCPLNAVRDKYKLQKFNCVANLSPKPVQSLFEAQV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1000 484 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
Pvu9g1000 484 CDD CYCLIN 252 341 IPR013763 -
Pvu9g1000 484 SMART Cyclin_C_2 351 474 IPR004367 -
Pvu9g1000 484 MobiDBLite consensus disorder prediction 1 20 - -
Pvu9g1000 484 CDD CYCLIN 349 441 IPR013763 -
Pvu9g1000 484 Gene3D - 236 349 - -
Pvu9g1000 484 PIRSF Cyclin_A_B_D_E 30 483 IPR039361 -
Pvu9g1000 484 SMART cyclin_7 258 342 IPR013763 -
Pvu9g1000 484 SMART cyclin_7 355 443 IPR013763 -
Pvu9g1000 484 Pfam Cyclin, C-terminal domain 351 473 IPR004367 -
Pvu9g1000 484 PANTHER CYCLIN-A2-4 49 480 - -
Pvu9g1000 484 Pfam Cyclin, N-terminal domain 222 349 IPR006671 -
Pvu9g1000 484 MobiDBLite consensus disorder prediction 1 58 - -
Pvu9g1000 484 Gene3D - 222 470 - -
Pvu9g1000 484 PANTHER CYCLINS 49 480 IPR039361 -
Pvu9g1000 484 SUPERFAMILY Cyclin-like 211 348 IPR036915 -
Pvu9g1000 484 MobiDBLite consensus disorder prediction 34 58 - -
Pvu9g1000 484 SUPERFAMILY Cyclin-like 350 473 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1000 Pvu-Chr9 14960125 14965937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1000 7 480 Core Cell Cycle Gene Families AT5G25380 47.799 1.31e-146 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1000 K06627 - gmx:100807750 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1000 9 14960125 14965937 Pvu9g1000 9 14960125 14965937 ECH
Pvu1g0568 1 6458056 6464471 Pvu9g1000 9 14960125 14965937 PCT