Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0990 ATGTTGAATAATATAAAATTCCAAAAATCTAGAGGTGTTTGTTCTTTGTTTGGATTTTCTTCTTCTTTGCGCTCTTTTGCCTCTTCTTTCTCTGTCCATCTATCTATTCAACTCTCTCTTCGATTTTTGTCCTATGTTTCTCACTTAGCTCTACCAACAAAATTCAACTCTTTCACCACTTCCTTCTGCGTTTCACAGCTCCCAGCTCACTCCTCACTTGCTCTTCAACATATTTCTATCTCAACTCTCTCACCTTCTGCTTCTACAGCCATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCAAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAACAGCAACAACCACAATCCCAGCAGTCGCAGCATCAGCAACAACAACAGCACATGCAGATGCAACATCTTCTTTTGCAGAGAGCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAACAACAACAACAACATCAACAACAATCACAACAACAACAGTCCCAACCACAACAAAGCAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGATTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAACACGTACTCAGCAATTACCAGGGTCTACTCTGGATATAAAGGGCGAGATCAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAACAATAATTTGACTTTGAGAGGGTGGCCACTCACAGGTTTGGAACAACTGCGCACTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAGTTTGGCGTCACCATCTGCCACTGAAGAAAGTAGAAGACTAAGAATGCTATTGAGCAGTAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGACACAGATATGCTAATGAAGGTGAAACTGGCTCAGTTACAGCAGCAACATCAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAGGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCTTGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGGAGAAAGAGAAAGCAGCCTGGATCTTCATCAGGTCCTGCCAATAGTACAGGCACCGCAAATACGACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACCCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCCAATAGTGGCAGTTCTTCAAAGCCTCTAATGATGTTTGGTACTGATGGTTCTGGAACCCTTACATCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGTAAAGTTGCGTGTTGCCATTTCTCATCTGATGGGAAATTACTTGCTAGTGGTGGGCATGACAAAAAGGCCGTTTTATGGTATACGGACACTCTTAAACAGAGAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCATCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCTCTTCGCACCTTCACGGGACATTCTACAACTGTTATGTCCCTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCATGTGACGGTGACGGGGAGATACGATACTGGAGCATAAACAATGGCAGCTGTGCTAGAGTCTGGAAGGGTGGCACCACTCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTCGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTAGAGACACAAGCGTGCCGATTTTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGCTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTGGATCAGGGAGTGAAGGGGAATGTGTGCATGAACTTAGCTGTAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTTGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGTGAGAACAAGACAATGACTCTATCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2976 0.4519 MLNNIKFQKSRGVCSLFGFSSSLRSFASSFSVHLSIQLSLRFLSYVSHLALPTKFNSFTTSFCVSQLPAHSSLALQHISISTLSPSASTAMSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQSQQSQHQQQQQHMQMQHLLLQRAQQQQQQQQQQQQQQQQQQQQQQQHQQQSQQQQSQPQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQTRTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGNNNLTLRGWPLTGLEQLRTGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSATEESRRLRMLLSSRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSLSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGSGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDTLKQRATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSTTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRFSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFLKLWK* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 959 991 - -
Pvu9g0990 991 Coils Coil 201 243 - -
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 707 748 IPR001680 GO:0005515
Pvu9g0990 991 Coils Coil 500 520 - -
Pvu9g0990 991 ProSiteProfiles LIS1 homology (LisH) motif profile. 98 130 IPR006594 GO:0005515
Pvu9g0990 991 Gene3D - 683 840 IPR015943 GO:0005515
Pvu9g0990 991 Pfam LisH 100 126 IPR006594 GO:0005515
Pvu9g0990 991 SMART Lish 98 130 IPR006594 GO:0005515
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 792 834 IPR001680 GO:0005515
Pvu9g0990 991 MobiDBLite consensus disorder prediction 501 633 - -
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 784 IPR001680 GO:0005515
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 874 914 IPR001680 GO:0005515
Pvu9g0990 991 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 91 991 IPR044716 GO:0003714
Pvu9g0990 991 SMART WD40_4 952 991 IPR001680 GO:0005515
Pvu9g0990 991 SMART WD40_4 911 950 IPR001680 GO:0005515
Pvu9g0990 991 SMART WD40_4 867 905 IPR001680 GO:0005515
Pvu9g0990 991 SMART WD40_4 785 825 IPR001680 GO:0005515
Pvu9g0990 991 SMART WD40_4 828 864 IPR001680 GO:0005515
Pvu9g0990 991 SMART WD40_4 742 781 IPR001680 GO:0005515
Pvu9g0990 991 SMART WD40_4 700 739 IPR001680 GO:0005515
Pvu9g0990 991 SUPERFAMILY WD40 repeat-like 705 991 IPR036322 GO:0005515
Pvu9g0990 991 Gene3D - 841 991 IPR015943 GO:0005515
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 792 830 - -
Pvu9g0990 991 Pfam WD domain, G-beta repeat 788 825 IPR001680 GO:0005515
Pvu9g0990 991 Pfam WD domain, G-beta repeat 709 738 IPR001680 GO:0005515
Pvu9g0990 991 Pfam WD domain, G-beta repeat 747 781 IPR001680 GO:0005515
Pvu9g0990 991 Pfam WD domain, G-beta repeat 870 905 IPR001680 GO:0005515
Pvu9g0990 991 Pfam WD domain, G-beta repeat 954 991 IPR001680 GO:0005515
Pvu9g0990 991 MobiDBLite consensus disorder prediction 179 205 - -
Pvu9g0990 991 MobiDBLite consensus disorder prediction 473 492 - -
Pvu9g0990 991 MobiDBLite consensus disorder prediction 501 542 - -
Pvu9g0990 991 ProSitePatterns Trp-Asp (WD) repeats signature. 768 782 IPR019775 -
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 959 991 IPR001680 GO:0005515
Pvu9g0990 991 CDD WD40 707 991 - -
Pvu9g0990 991 MobiDBLite consensus disorder prediction 553 613 - -
Pvu9g0990 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 784 - -
Pvu9g0990 991 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 91 991 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0990 Pvu-Chr9 14845791 14854165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0990 786 990 Miscellaneous Gene Families AT5G08390 23.810 6.72e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pvu9g0990 WD40 0.0088 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0990 - - pvu:PHAVU_009G096600g 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0990 9 14845791 14854165 Pvu9g0990 9 14845791 14854165 ECH
Pvu1g0560 1 6298862 6313234 Pvu9g0990 9 14845791 14854165 PCT