Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0960 ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTACTGAAGAGAAGGGTGTGGCTGGGGACATTTGAGACAGCTGAGGCTGCTGCAAGGGCCTATGACCAAGCAGCCATTTTGATGAATGGCCAGAATGCCAAGACCAACTTCCCCACTTCAAAGAACCAGGCTGAAGCTGATGCCAGTGCCACCACTGCTGCTTCTCGTCATGACAACACTTTCTTATCTCCCAAAGCTCTCTCAGAACTCCTCAGCACAAAGCTCAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTCAGGCTAGATGCTGATAATTCCCACATTGGAGTGTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTGGAGCTTGGGAAGAAGCACACCGAGGGTGAATCAGCATGGTCACCAAACAGTAGTACTAACGACACTGCTGGAAACAGTGGAGTAGTTGTAGTAGAAGAAGGAGAAGAAGAAGAAGAAGAAGATAGACTCGCTTTGCAGATGATCGAGGAGCTACTCAATTGGAACTAG 594 0.5017 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEADASATTAASRHDNTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKHTEGESAWSPNSSTNDTAGNSGVVVVEEGEEEEEEDRLALQMIEELLNWN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0960 197 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pvu9g0960 197 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pvu9g0960 197 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pvu9g0960 197 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Pvu9g0960 197 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pvu9g0960 197 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 197 - -
Pvu9g0960 197 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pvu9g0960 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 197 - -
Pvu9g0960 197 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Pvu9g0960 197 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0960 Pvu-Chr9 14411949 14413203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0960 1 196 AP2-EREBP Transcription Factor Family AT5G25390 59.694 3.69e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu9g0960 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0960 - - gmx:100806821 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0960 9 14411949 14413203 Pvu9g0960 9 14411949 14413203 ECH
Pvu3g1709 3 37339186 37340346 Pvu9g0960 9 14411949 14413203 ECH
Pvu9g2033 9 29159605 29160767 Pvu9g0960 9 14411949 14413203 ECH