Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0959 ATGTCGCGTTTGCTGCATGGGAGCCTCGATGTGACCATATACGAGGTGGATACACTGCCAACTCTTAACGACTGCGATTTCAATCTCTGCTGCAAGGGTACAAGTCGAAGCGTGAGGAAAAGAGTACTCTCCCAACTCAAGAGTTGTTTGTTCTGTCAATGCCAATGCCAACCCGGGTCTACCCAAACGGGTCTCTATGCAACAGTTGATTTAGACAAAGCAAGAGTTGGAAGGACTAAAGTGCTAAATGATGAACGATCCAACACCATGTGGAATGATACCTTTCGCATATACTGTGCACATTTGATCTCCCATGTTATATTCACTGTCAAACAAAAAGACCCAATTAATGCAACTCTAATTGGAAGGGCTTATGTTCCAGTTGAGCAAGTTATGACAGGTAACATAGTGGACACATGGGTCCAAATATTAGACGAGGATCTTAATCCCATACCAAGTGACTCTAAAATCCATGTCAAAATGCAATTTTCTGATGTTAGGAATGACATAAACTGGTCTGGAGGAATAAGAAGTCCAAGGTTTCAAGGAGTTCCCCACACCTTCTTCGGCCAAAGAACTGGTTGCAACGTTACTTTGTACCAAGATGCCCATGTTTCAGATGGTTTTGAGCCGATGATTCCCGTGTCAGGAAGAAAGCCTTATGAGTTTAGGAAATGCTGGGAGGATATTTACAATGCCATTTCGGATGCTAGGCACTTTATTTACATAACTGGTTGGTCAGTGTACACTGAAATAACCTTGATTAGGGACCCCTTGCAGCCCAAGAGAATCACCCTTGGGGAGCTTCTCAAGAGGAGAGCAGAGGAAGGTGTTCATGTTCTTATGCTTGTTTGGGATGATAAAACATCTGTGCCAGATTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGATTACTTCAAAAACACAAAGGTAAATTGTGTTTTGTGTCCACGGAACCCGGATGTTGGAAGAAGCATTGTGCAAGGTTTGGAAACTTCAACAATGTTCACTCATCACCAAAAGACTATAGTTGTTGATAGTCAAGTTGTTGGTCCTGCTGTGGGACAACGACAAAAGAGAACAATAACAAGTTTTGTAGGTGGCATTGATCTTTGTGATGGGAGATACGATACTCAGGAGCATCCTCTATTTTCAACTTTGGATACAGTGCATAAAGATGACTTCCATCAGCCAAATTTCCCAGATGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCACGATATTCACTGCAAGTTAGAAGGGGATGTTGCTTGGGATGTTTTGTCCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAAGCAGCTCCTATTCCCTTCGAGCATGCTTAACCAGTACTTTGTCCCTCGATCCACTGTGGCAACAGCAAATGATAACGAGACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTTTGGCTTCCCCCAAGACCCACAAGAAGCAGCTGAATTAGGCCTTGTTAGTGCGAACAACAACATCATTGATAGAAGTATTCAAGATGCTTACATAAATGCTATTCGAAGAGCCCAAAACTTCATCTACATTGAAAACCAATATTTCCTAGGGAGTTCATATGGTTGGAAAGCATCTGATATTGTAGTTGAGGATATCGGTGCATTGCATCTTATACCAAAGGAGGTGTCACTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGATTTTCTGTGTATGTTGTCATACCAATGTGGCCAGAAGGCATACCCGAGAGTGATTCAGTTCAAGCAATACTAGACTGGCAAAGGAGGACAATGGAGATGATGTATGCTGATATAGCTCAAGCCATTCAAAGAACTGGAATTGAAGCCCACCCAAGGGACTACTTGACCTTTTTCTGCCTTGGAAACCGTGAGGGTCAGAAAAATAGCAACCACACTCCTACTGAGGCACCACAACCCGACAGTGACTACAGCAGAGCACAAAAGTCTAGGCGATTTATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATAATTGGTTCTGCAAACATAAACCAAAGATCGATGGATGGGGCAAGAGACAGTGAGATTGCAGTGGGTGCATTTCAGCCACGGCATTTAGCATGTAATGGGCCAGTCAGAGGACAGATATATGGATTTCGACGTGCACTATGGTATGAACACCTTGGGGATATTAATGATACAGGCATTTTCAACAATCCTGAAAGCGAAGAATGCATCAGGCTTGTGAATCATCTTGCTGAAACCAACTGGGCTGCATACTCTGACCAAACATTTGATGAGAATGGAGAATTTCACCACCTCTTGCGTTATCCAATAGAAGTAACCAACTATGGAACCATAACCAACCTTCCAGGGCTTCAATATTTTCCTGACACTAAGGCTCGGATTTTGGGTTCCAAATCAGAATATCTTCCTCCAATTCTCACCACCTAG 2484 0.4295 MSRLLHGSLDVTIYEVDTLPTLNDCDFNLCCKGTSRSVRKRVLSQLKSCLFCQCQCQPGSTQTGLYATVDLDKARVGRTKVLNDERSNTMWNDTFRIYCAHLISHVIFTVKQKDPINATLIGRAYVPVEQVMTGNIVDTWVQILDEDLNPIPSDSKIHVKMQFSDVRNDINWSGGIRSPRFQGVPHTFFGQRTGCNVTLYQDAHVSDGFEPMIPVSGRKPYEFRKCWEDIYNAISDARHFIYITGWSVYTEITLIRDPLQPKRITLGELLKRRAEEGVHVLMLVWDDKTSVPDFKKDGLMATHDQETADYFKNTKVNCVLCPRNPDVGRSIVQGLETSTMFTHHQKTIVVDSQVVGPAVGQRQKRTITSFVGGIDLCDGRYDTQEHPLFSTLDTVHKDDFHQPNFPDASIKKGGPREPWHDIHCKLEGDVAWDVLSNFQQRWEKQVGKQLLFPSSMLNQYFVPRSTVATANDNETWNVQLFRSIDGGAAFGFPQDPQEAAELGLVSANNNIIDRSIQDAYINAIRRAQNFIYIENQYFLGSSYGWKASDIVVEDIGALHLIPKEVSLKIVSKIEAGERFSVYVVIPMWPEGIPESDSVQAILDWQRRTMEMMYADIAQAIQRTGIEAHPRDYLTFFCLGNREGQKNSNHTPTEAPQPDSDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAVGAFQPRHLACNGPVRGQIYGFRRALWYEHLGDINDTGIFNNPESEECIRLVNHLAETNWAAYSDQTFDENGEFHHLLRYPIEVTNYGTITNLPGLQYFPDTKARILGSKSEYLPPILTT* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0959 827 MobiDBLite consensus disorder prediction 644 663 - -
Pvu9g0959 827 ProSiteProfiles C2 domain profile. 1 141 IPR000008 -
Pvu9g0959 827 Gene3D C2 domain 6 171 IPR035892 -
Pvu9g0959 827 SMART pld_4 670 697 IPR001736 GO:0003824
Pvu9g0959 827 SMART pld_4 339 380 IPR001736 GO:0003824
Pvu9g0959 827 Pfam C2 domain 8 142 IPR000008 -
Pvu9g0959 827 SMART C2_3c 8 140 IPR000008 -
Pvu9g0959 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 670 697 IPR001736 GO:0003824
Pvu9g0959 827 PIRSF PLD_plant 1 827 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pvu9g0959 827 Gene3D Endonuclease Chain A 215 474 - -
Pvu9g0959 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 165 IPR035892 -
Pvu9g0959 827 Pfam Phospholipase D Active site motif 671 697 IPR001736 GO:0003824
Pvu9g0959 827 Pfam Phospholipase D Active site motif 339 380 IPR001736 GO:0003824
Pvu9g0959 827 Gene3D Endonuclease Chain A 483 713 - -
Pvu9g0959 827 CDD C2_plant_PLD 1 163 - -
Pvu9g0959 827 PANTHER PHOSPHOLIPASE D ALPHA 3 3 827 - -
Pvu9g0959 827 SUPERFAMILY Phospholipase D/nuclease 513 740 - -
Pvu9g0959 827 SUPERFAMILY Phospholipase D/nuclease 169 453 - -
Pvu9g0959 827 MobiDBLite consensus disorder prediction 644 661 - -
Pvu9g0959 827 Pfam Phospholipase D C terminal 746 817 IPR024632 -
Pvu9g0959 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 339 380 IPR001736 GO:0003824
Pvu9g0959 827 PANTHER PHOSPHOLIPASE D 3 827 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0959 Pvu-Chr9 14396105 14399311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0959 4 827 Phospholipase D Gene Family (Wang group) AT3G15730 62.273 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0959 K01115 - gmx:100791688 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0959 9 14396105 14399311 Pvu9g0959 9 14396105 14399311 ECH
Pvu9g0958 9 14385072 14388517 Pvu9g0959 9 14396105 14399311 ECH