Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0929 ATGGCGTACCACAACCCTCAAGACCTTCCACTTCACCATTTCACTGACCAACAACACCATAACCAAACTCTCACTCACTCATCTCTCCTCTCCGACCCTACCTCCAAACCTCCCTCCGATCCTCACCAACCTGCGCCGAATTGGCTCAACAACGCCCTTCTCCGCGCGCACTACACCGACAACACTACCACAAACAACAATAATGACAACAACAACAACTCCGACACCAACGTTAACGCAGCAAACAACGGCGCCACCAACTTCCTCAACCTCCACACTGCCGCTACGGACTCCGGCCAATGGCTCGCGCGCCCGATCCTCCACCGCAACCAGAGCGAGGTCATCGACGACGTCGCGGCAGCAGGCGACTCCGCCATGGCCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCGGCAGTGGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCGAGGTTCAAGGCGGAGATTCTATCTCACCCTCTGTACGAACAGCTTCTGTCGGCACATGTAGCGTGTCTTCGGATCGCCACACCGGTCGACCAATTGCCCAGGATCGACGCTCAGCTTGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCTTTCGGACAAGCCATAGTTGGGGATGACAAGGAACTCGATCAGTTCTTGTCGCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAACAGCATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGACGACGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTGAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGCTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCCTCCACTTCCACTGTCTTGAAGAGCAAGCGCAAAAGAAGCAATGCAGATGATAATAGTGCTGTTCATCATATGTAA 1287 0.5159 MAYHNPQDLPLHHFTDQQHHNQTLTHSSLLSDPTSKPPSDPHQPAPNWLNNALLRAHYTDNTTTNNNNDNNNNSDTNVNAANNGATNFLNLHTAATDSGQWLARPILHRNQSEVIDDVAAAGDSAMAGAGSGDLKSEAAAVEGGGDGLMNWQNARFKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNADDNSAVHHM* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0929 428 MobiDBLite consensus disorder prediction 402 428 - -
Pvu9g0929 428 MobiDBLite consensus disorder prediction 60 81 - -
Pvu9g0929 428 Pfam Homeobox KN domain 359 398 IPR008422 GO:0003677|GO:0006355
Pvu9g0929 428 MobiDBLite consensus disorder prediction 262 281 - -
Pvu9g0929 428 Pfam KNOX1 domain 157 197 IPR005540 GO:0003677|GO:0005634
Pvu9g0929 428 Pfam ELK domain 319 340 IPR005539 GO:0003677
Pvu9g0929 428 SUPERFAMILY Homeodomain-like 341 404 IPR009057 -
Pvu9g0929 428 MobiDBLite consensus disorder prediction 21 36 - -
Pvu9g0929 428 ProSiteProfiles ELK domain profile. 319 339 IPR005539 GO:0003677
Pvu9g0929 428 MobiDBLite consensus disorder prediction 21 48 - -
Pvu9g0929 428 CDD homeodomain 342 403 IPR001356 GO:0003677
Pvu9g0929 428 Gene3D - 340 401 - -
Pvu9g0929 428 SMART KNOX2_2 207 262 IPR005541 GO:0003677|GO:0005634
Pvu9g0929 428 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 418 - -
Pvu9g0929 428 SMART ELK_2 319 340 IPR005539 GO:0003677
Pvu9g0929 428 SMART KNOX1_2 154 198 IPR005540 GO:0003677|GO:0005634
Pvu9g0929 428 SMART HOX_1 341 406 IPR001356 GO:0003677
Pvu9g0929 428 MobiDBLite consensus disorder prediction 413 428 - -
Pvu9g0929 428 Pfam KNOX2 domain 211 261 IPR005541 GO:0003677|GO:0005634
Pvu9g0929 428 ProSiteProfiles 'Homeobox' domain profile. 339 402 IPR001356 GO:0003677
Pvu9g0929 428 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 34 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0929 Pvu-Chr9 14059829 14063851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0929 1 416 Homeobox Transcription Factor Family AT5G25220 65.929 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pvu9g0929 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0929 - - gmx:100790048 719.924