Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0924 ATGGATGAAGATAGGGGTGATGTATTGGATCCGGTTCATGATGGGAATTTAAGTCATTTGGTTGAAGGGGTTGCAATTCGTAGCGATAGTATAAGTGGAGAAGCTGGAACTTCGAGACAGGTCGATGAGAACTCGGGATCTGATAAGGAGCTAAAGGAGGAAGTTAAGGGTCAAGACAAGCATGGTCGCGAAAATTCCAGTGATAAGTTACCTGGGGTTGATCAGGGAACTAGTTATAATTCAAACCATTTGGTTAATCAAGAAGTGATTGAAACTGTGGTTGTGGTTGAGTCTGTTCAGAGTGAGTACATCAATGAAGAGAATAGGAAATTGGAAGTGAAAGTTGAGGAAGCAGAGTTGAGTTTGGTGTCCATGAAAGCAGCAAAAGAGGTTTCTGAAACTGATAAAAGTTCATGCGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTGTATGAGAATTCTGAAGGTGAAACGATTTGTAGGATTTGCCATCTGACTTCTGGTCAGTCATCAGATGTAACAATTTTTGGCACTGCTAACAGTGCCACAAGTTTAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAGCTAGGCATTGCGCACGTTCACTGTGCTGAGGCGTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGCGAGCCTGCAAAAAATGTTTCAGGTGTTACTAGTAATGGATTTATAGAAGAGTGGAATGAAAGAAGATTCATGGACAACGATGGTAGTTCATCCCCAAGGGTTGTTGGATGCTGGCGGGGACAGCCATTTTGTAACTTCTTGATGGCATGCTTGGTGATAGCGTTTGTTCTGCCCTGGTTTTTTCGTGTAAATATGTTCTAG 870 0.4218 MDEDRGDVLDPVHDGNLSHLVEGVAIRSDSISGEAGTSRQVDENSGSDKELKEEVKGQDKHGRENSSDKLPGVDQGTSYNSNHLVNQEVIETVVVVESVQSEYINEENRKLEVKVEEAELSLVSMKAAKEVSETDKSSCVIDIKCSSHKKLYENSEGETICRICHLTSGQSSDVTIFGTANSATSLDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVTSNGFIEEWNERRFMDNDGSSSPRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0924 289 SMART ringv_2 160 223 IPR011016 GO:0008270
Pvu9g0924 289 PANTHER ZINC FINGER, RING-CH-TYPE 47 289 - -
Pvu9g0924 289 Coils Coil 101 128 - -
Pvu9g0924 289 MobiDBLite consensus disorder prediction 43 68 - -
Pvu9g0924 289 SUPERFAMILY RING/U-box 155 225 - -
Pvu9g0924 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 234 IPR013083 -
Pvu9g0924 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 47 289 - -
Pvu9g0924 289 Pfam RING-variant domain 161 222 IPR011016 GO:0008270
Pvu9g0924 289 MobiDBLite consensus disorder prediction 27 81 - -
Pvu9g0924 289 ProSiteProfiles Zinc finger RING-CH-type profile. 153 229 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0924 Pvu-Chr9 13989469 13992481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0924 141 288 C3H Transcription Factor Family AT5G05830 40.523 1.01e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0924 - - gmx:100776373 454.521